CX288714

Overview
NameCX288714
Unique NameCX288714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length494
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 5.704e-74
Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRR NRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA A
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANA 145          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.271e-73
Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRR NRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS  EELA A
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANA 145          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.271e-73
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR++ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRR NRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA A
Sbjct:    1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANA 145          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.405e-72
Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRR NRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA A
Sbjct:    1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANA 145          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 2.173e-65
Identity = 119/145 (82.07%), Postives = 129/145 (88.97%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            MKHNNVIPNGHFKK W+NYVKT FNQPA K RR++ARQ KAVKIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH R NRSLEG Q+NVQRLKTYKAKLV+FPR AR  K GDSA +ELA A
Sbjct:    1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANA 145          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 3.714e-57
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 1
Query:   82 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            NGHFKKHWQNYVKTWFNQPARK RR++ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR NRSLEGLQ+NVQRL+  + +LVVFPRRA + +     P    TA
Sbjct:    5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTA 141          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 8.294e-49
Identity = 91/145 (62.76%), Postives = 114/145 (78.62%), Query Frame = 1
Query:   58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            ++ N+++PNGHF K WQ +VKTWFNQPARK RR+ AR +KA   FPRP AG L+P+V  QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRR NRSLE LQ+NVQRLKTY+A LV+FPR  +K KA +++  + + A
Sbjct:    2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAA 146          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 2.043e-47
Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            N +I N HF K WQ  V+TWFNQPARK RR+ ARQ KA +I PRP +GPLRPVV   T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS  EEL  A
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMA 147          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 7.266e-45
Identity = 89/142 (62.68%), Postives = 107/142 (75.35%), Query Frame = 1
Query:   67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            N +I N HF K WQ  V+TWFNQPARK RR+ ARQ KA +I PRP AGPLRP+V   T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR NRS E L  NVQRLK Y++KL++FPR+    K GDS  EE+  A
Sbjct:    6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMA 147          
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 1.619e-44
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 1
Query:   61 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492
            K NN+IPN H+ K WQ +VKTWFNQPARK RR   R KKA  +FPRP +G LRPVV   T++Y+ KLRAGRGFTLEELK AGI    A TIG++VD RR N+SLE  Q N+QRLK Y++KL++FP   +K +AG+S+ EE   A
Sbjct:    3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLA 146          
The following BLAST results are available for this feature:
BLAST of CX288714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL132_BRANA5.704e-7491.0360S ribosomal protein L13-2 OS=Brassica napus PE=2... [more]
RL131_BRANA1.271e-7390.3460S ribosomal protein L13-1 OS=Brassica napus PE=2... [more]
RL131_ARATH1.271e-7388.9760S ribosomal protein L13-1 OS=Arabidopsis thalian... [more]
RL133_ARATH1.405e-7288.9760S ribosomal protein L13-3 OS=Arabidopsis thalian... [more]
RL132_ARATH2.173e-6582.07Putative 60S ribosomal protein L13-2 OS=Arabidopsi... [more]
RL13_TOBAC3.714e-5776.6460S ribosomal protein L13 OS=Nicotiana tabacum GN=... [more]
RL13_CHLSW8.294e-4962.7660S ribosomal protein L13 OS=Chlamydomonas sp. (st... [more]
RL13_DANRE2.043e-4766.2060S ribosomal protein L13 OS=Danio rerio GN=rpl13 ... [more]
RL13_ICTPU7.266e-4562.6860S ribosomal protein L13 OS=Ictalurus punctatus G... [more]
RL13_DROME1.619e-4459.7260S ribosomal protein L13 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC02003E11SK IF1 Citrus clementina cDNA clone C02003E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288714 ID=CX288714; Name=CX288714; organism=Citrus clementina; type=EST; length=494bp
GCCGTCGAGACTGAGAGAAACGGACATAGTCGTCTGCATTTCGCTCTGTA
AACAGAAATGAAGCATAACAACGTAATTCCAAATGGGCACTTTAAGAAGC
ATTGGCAGAACTATGTCAAGACTTGGTTCAACCAACCTGCTCGCAAAAAT
CGACGACAAGTCGCTCGTCAAAAGAAGGCCGTTAAAATCTTCCCTCGCCC
TACTGCTGGGCCGCTTCGTCCCGTCGTTCATGGCCAGACTTTGAAATACA
ACATGAAATTAAGGGCTGGCAGAGGCTTTACTCTTGAGGAACTCAAGGCT
GCTGGAATTCCCAAGAAACTGGCTCCGACAATTGGTGTTTCAGTCGATCA
TCGACGCANGAACCGTTCTCTTGAGGGTCTTCAATCTAATGTTCAGAGGC
TCAAGACTTACAAGGCTAAGTTGGTTGTTTTCCCAAGACGTGCTCGCAAG
TTCAAGGCTGGTGATTCTGCCCCTGAGGAATTGGCAACAGCAAC
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