CX288714
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 276.174 bits (705), Expect = 5.704e-74 Identity = 132/145 (91.03%), Postives = 138/145 (95.17%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG+S+DHRR NRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA A Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANA 145
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.271e-73 Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMK+R G+GFTLEELK+AGIPKKLAPTIG++VDHRR NRSLEGLQSNVQRLKTYKAKLV+FPRRARK KAGDS EELA A Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKVRTGKGFTLEELKSAGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEELANA 145
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1) HSP 1 Score: 275.018 bits (702), Expect = 1.271e-73 Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 MKHNNVIPNGHFKKHWQNYVKTWFNQPARK RR++ARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+R G+GFTLEELKAAGIPKKLAPTIG++VDHRR NRSLEGLQ+NVQRLKTYK KLV+FPRRARK KAGDS PEELA A Sbjct: 1 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEELANA 145
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=2 SV=1) HSP 1 Score: 271.552 bits (693), Expect = 1.405e-72 Identity = 129/145 (88.97%), Postives = 138/145 (95.17%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 MKHNNVIP+ HF+KHWQNYVKTWFNQPARK RR+VARQKKAVKIFPRPT+GPLRPVVHGQTLKYNMK+RAG+GFTLEELK AGIPKKLAPTIG+SVDHRR NRSLEGLQSNVQRLKTYKAKLVVFPRR+R+ KAGDS PEELA A Sbjct: 1 MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEELANA 145
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 2.173e-65 Identity = 119/145 (82.07%), Postives = 129/145 (88.97%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 MKHNNVIPNGHFKK W+NYVKT FNQPA K RR++ARQ KAVKIFPRPTAGP+RPVVH QTL YNMK+RAG+GFTLEELKAAGIPKKLAPTIG+SVDH R NRSLEG Q+NVQRLKTYKAKLV+FPR AR K GDSA +ELA A Sbjct: 1 MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANA 145
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_TOBAC (60S ribosomal protein L13 OS=Nicotiana tabacum GN=RPL13 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 3.714e-57 Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 1 Query: 82 NGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 NGHFKKHWQNYVKTWFNQPARK RR++ARQKKAVKI PRPTAG LRP+VHGQTLKYNMK+R+GRGF+LEELKAAGIPKKLAPTIG++VDHRR NRSLEGLQ+NVQRL+ + +LVVFPRRA + + P TA Sbjct: 5 NGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKISPRPTAGTLRPIVHGQTLKYNMKVRSGRGFSLEELKAAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLEDLQGQLVVFPRRASRSRLVILPPRNCLTA 141
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_CHLSW (60S ribosomal protein L13 OS=Chlamydomonas sp. (strain W80) GN=RPL13 PE=2 SV=1) HSP 1 Score: 192.586 bits (488), Expect = 8.294e-49 Identity = 91/145 (62.76%), Postives = 114/145 (78.62%), Query Frame = 1 Query: 58 MKHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 ++ N+++PNGHF K WQ +VKTWFNQPARK RR+ AR +KA FPRP AG L+P+V QT+KYN K R GRGFTLEELK AGIP K APT+G++VDHRR NRSLE LQ+NVQRLKTY+A LV+FPR +K KA +++ + + A Sbjct: 2 VRGNDMLPNGHFHKKWQFHVKTWFNQPARKQRRRNARAEKAKATFPRPVAGSLKPIVRCQTVKYNTKQRLGRGFTLEELKEAGIPAKFAPTVGIAVDHRRKNRSLETLQANVQRLKTYRASLVIFPRNMKKPKAFEASAADCSAA 146
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_DANRE (60S ribosomal protein L13 OS=Danio rerio GN=rpl13 PE=2 SV=3) HSP 1 Score: 187.963 bits (476), Expect = 2.043e-47 Identity = 94/142 (66.20%), Postives = 110/142 (77.46%), Query Frame = 1 Query: 67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 N +I N HF K WQ V+TWFNQPARK RR+ ARQ KA +I PRP +GPLRPVV T++Y+ K+RAGRGFTLEELKAAGI KK+A TIG+SVD RR NRS E LQ+NVQRLK Y+ KL++FPR+A K K GDS EEL A Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPTIRYHTKVRAGRGFTLEELKAAGINKKVARTIGISVDSRRRNRSTESLQANVQRLKEYRTKLIIFPRKAAKPKKGDSTEEELKMA 147
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_ICTPU (60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3) HSP 1 Score: 179.489 bits (454), Expect = 7.266e-45 Identity = 89/142 (62.68%), Postives = 107/142 (75.35%), Query Frame = 1 Query: 67 NNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 N +I N HF K WQ V+TWFNQPARK RR+ ARQ KA +I PRP AGPLRP+V T++YN K+RAGRGFTLEELKAAGI K++A TIG++VD RR NRS E L NVQRLK Y++KL++FPR+ K GDS EE+ A Sbjct: 6 NGMILNPHFHKDWQKRVRTWFNQPARKLRRRKARQAKARRIAPRPVAGPLRPIVRCPTVRYNTKVRAGRGFTLEELKAAGINKRVARTIGIAVDPRRRNRSTESLHVNVQRLKVYRSKLILFPRKVSAPKKGDSTEEEVKMA 147
BLAST of CX288714 vs. ExPASy Swiss-Prot
Match: RL13_DROME (60S ribosomal protein L13 OS=Drosophila melanogaster GN=RpL13 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 1.619e-44 Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 1 Query: 61 KHNNVIPNGHFKKHWQNYVKTWFNQPARKNRRQVARQKKAVKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGVSVDHRRXNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATA 492 K NN+IPN H+ K WQ +VKTWFNQPARK RR R KKA +FPRP +G LRPVV T++Y+ KLRAGRGFTLEELK AGI A TIG++VD RR N+SLE Q N+QRLK Y++KL++FP +K +AG+S+ EE A Sbjct: 3 KGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRVKKAKAVFPRPASGALRPVVRCPTIRYHTKLRAGRGFTLEELKGAGIGANFAKTIGIAVDRRRKNKSLESRQRNIQRLKEYRSKLILFPINEKKIRAGESSLEECKLA 146 The following BLAST results are available for this feature:
BLAST of CX288714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288714 ID=CX288714; Name=CX288714; organism=Citrus clementina; type=EST; length=494bpback to top |