CX288716

Overview
NameCX288716
Unique NameCX288716
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288716_ssr60 microsatellite CX288716_ssr60:60..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11769 contig Ccv1_Contig11769:35..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_RAT (Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     ++ DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_PONAB (Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     ++ DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_MOUSE (Cleavage and polyadenylation specificity factor subunit 5 OS=Mus musculus GN=Nudt21 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     ++ DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_HUMAN (Cleavage and polyadenylation specificity factor subunit 5 OS=Homo sapiens GN=NUDT21 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     ++ DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_BOVIN (Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 5.677e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     ++ DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVLQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_DANRE (Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 9.684e-40
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     +  DW I +C+  WWRPNFE   YPY P HI
Sbjct:   38 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFEKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVKQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 166          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_XENLA (Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.265e-39
Identity = 75/130 (57.69%), Postives = 92/130 (70.77%), Query Frame = 3
Query:  114 VNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +N YPL++YTFGTKEP  EKD+SVA R  RM+  + K GMR +VE +L+V EH  PH+LLLQ+G TF KLPGG L PGE+E+EGLKR +T  LG     +  DW I +C+  WWRPNFE   YPY P HI
Sbjct:   37 INLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILG-RQDGVQQDWVIDDCIGNWWRPNFEPPQYPYIPAHI 165          
BLAST of CX288716 vs. ExPASy Swiss-Prot
Match: CPSF5_DICDI (Cleavage and polyadenylation specificity factor subunit 5 OS=Dictyostelium discoideum GN=cpsf5 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.380e-35
Identity = 71/125 (56.80%), Postives = 92/125 (73.60%), Query Frame = 3
Query:  132 SSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLG-ANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHI 503
            +SY+FG KE K EK+ S+  +LAR+K +Y KEG+R +VE I+++ +H HPHILLLQ  N F KLPGG+LKPGENEI+GL RKLT KL    +P     W+IG+ V+ WWRPNFE  ++PY P HI
Sbjct:   13 TSYSFG-KEEKKEKEQSLTSKLARLKDSYEKEGLRKAVEGIIIIHDHGHPHILLLQDNNYF-KLPGGKLKPGENEIDGLIRKLTKKLSPTGTPVSDAPWEIGDHVSTWWRPNFEPSLFPYIPSHI 135          
The following BLAST results are available for this feature:
BLAST of CX288716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CPSF5_RAT5.677e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_PONAB5.677e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_MOUSE5.677e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_HUMAN5.677e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_BOVIN5.677e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_DANRE9.684e-4057.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_XENLA1.265e-3957.69Cleavage and polyadenylation specificity factor su... [more]
CPSF5_DICDI9.380e-3556.80Cleavage and polyadenylation specificity factor su... [more]
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Properties
Property NameValue
Genbank descriptionC02003F01SK IF1 Citrus clementina cDNA clone C02003F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288716 ID=CX288716; Name=CX288716; organism=Citrus clementina; type=EST; length=503bp
ATTCGGCACGAGGATTTAAGGGGGAGAAACAGAGGCCGGTTGATTCGTTG
TTTCTCAATAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGTCGAAGATGGT
GACGTCACCGGTGGTGAACACGTACCCGCTGTCGAGTTACACATTCGGCA
CCAAAGAGCCGAAGATGGAGAAGGACACCTCCGTCGCCGATCGCCTTGCC
CGCATGAAAGTCAACTATATGAAAGAGGGCATGAGGACGAGTGTTGAAGC
AATTTTACTGGTTCAGGAACATAATCATCCTCACATACTACTTCTGCAAA
TTGGAAACACGTTCTGCAAACTTCCTGGTGGACGTTTAAAGCCTGGAGAG
AACGAAATTGAGGGGTTGAAAAGGAAGCTGACCAGCAAGCTTGGGGCGAA
TTCTCCTGCTCTTGTGCCTGACTGGCAAATTGGTGAATGTGTTGCAATCT
GGTGGAGGCCAAACTTTGAAACCATAATGTATCCTTACTGCCCTCCCCAC
ATC
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