CX288725

Overview
NameCX288725
Unique NameCX288725
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15017 contig Ccv1_Contig15017:125..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288725 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 36/62 (58.06%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:   33 IINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 218
            +++EAIT+LKERTGSS +AIAKF+E+K KA LP NF            A GKL KVKNS+KL
Sbjct:   56 MVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117
[Close]
BLAST of CX288725 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.764e-11
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 3 
Query:   33 IINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 218
            +I++AI+ LKERTGSSQ+AI KF+E+K K  LP+NF            A+GKLVKVKNSFKL
Sbjct:   57 MISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117
[Close]
BLAST of CX288725 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 38/62 (61.29%), Postives = 43/62 (69.35%), Query Frame = 3 
Query:   33 IINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 218
            +I +AI  LKERTGSSQ AI KFIEEKQK SLP+NF            A+ KLVKVKNS+KL
Sbjct:   62 MIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122
[Close]
BLAST of CX288725 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.043e-11
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = 3 
Query:   33 IINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 218
            +I +AI +LKE+ GSSQ+AIAKFIEEKQK  LP NF            A+GKL+KVK SFKL
Sbjct:   68 MIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128
The following BLAST results are available for this feature:
BLAST of CX288725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
H1_MAIZE8.593e-1358.06Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_EUPES2.764e-1158.06Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_SOLLC4.715e-1161.29Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_PEA8.043e-1158.06Histone H1 OS=Pisum sativum PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC02003F11SK IF1 Citrus clementina cDNA clone C02003F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288725 ID=CX288725; Name=CX288725; organism=Citrus clementina; type=EST; length=433bp
ATTCGGCACGAGGTGTGATTTTGGAATCGTAGATTATAAACGAAGCGATA
ACTGCGTTGAAGGAGAGGACCGGCTCGAGTCAATTTGCGATCGCGAAGTT
TATCGAGGAGAAACAGAAGGCTAGTCTCCCTAACAATTTCAAGAAACTGT
TGCTCGTTCAATTGAAGAAGCTTGTTGCCAACGGCAAGCTGGTCAAAGTC
AAGAACTCCTTCAAGCTCCCTCCTAAATCGTCCTCTTCTACCGCCGCCGC
TGCCGCCAAGAAGCCGAAACCTTCCTCTACCGGCGCCACTGCCGCCAAGA
AGCCGAAACCTTCCTCTACCGCTGCCGCCGCCGCGAAGAAGCCTAAAGCT
AGCTCCACTGATGCTGCGGCTAAGCAGACGAAGTCCAAGCCAAAAGCAAA
AGAAGCGGCAGTGAAGTCGATCAAGTCTCCGGC
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