CX288730

Overview
NameCX288730
Unique NameCX288730
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BPE_ARATH (Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.085e-46
Identity = 98/114 (85.96%), Postives = 101/114 (88.60%), Query Frame = 2
Query:   17 KAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKD 358
            KAEAE    +  EQ  Q  EP K DYIHVRARRGQATDSHSLA RARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN+RMNPGIEVFPPK+
Sbjct:  110 KAEAESLGTE-TEQKKQQMEPTK-DYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFPPKE 221          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH079_ARATH (Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.297e-43
Identity = 99/162 (61.11%), Postives = 112/162 (69.14%), Query Frame = 2
Query:   17 KAEAEPSS----VKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT--RMNPGIEVFPPKDFTQQTFDTAGMPFGSQATREYSRGTSPDWLHMQIGGGFERMT 484
            + E E SS     K  EQ ++P EPPK DYIHVRARRGQATD HSLA RARREKISE+M  LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VN+     P I VFP  D      D     +  Q   E +R + P+WLHMQ+ G F R T
Sbjct:  123 RPEGETSSGGGGSKATEQKNKP-EPPK-DYIHVRARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTGPTIGVFPSGDLGTLPIDVHRTIYEQQEANE-TRVSQPEWLHMQVDGNFNRTT 281          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.953e-37
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 2
Query:    2 DNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN-TRMNPGIEVFPPKD 358
            D+   + E E +       N++PPEPPK DYIHVRARRGQATDSHSLA R RREKI ERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VN TR++  ++    KD
Sbjct:  273 DDEEEEGEGEGNK----SNNTKPPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 3.953e-37
Identity = 78/116 (67.24%), Postives = 93/116 (80.17%), Query Frame = 2
Query:   17 KAEAEPSSVKPAEQNSQPPEP--PKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKD 358
            K +++P   K +E+N    +   P +DYIHVRARRGQATDSHSLA R RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY+QSLQRQVEFLSMKL +VNTR++  ++    KD
Sbjct:  228 KEDSDPKRCKKSEENGDKTKSIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKD 343          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.169e-35
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = 2
Query:   53 EQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ 367
            +Q  Q  +PPK  YIHVRARRGQAT+SHSLA R RREKISERMK LQDLVPGCNKV GKA++LDEIINY+QSLQRQVEFLSMKL  VN +M+  +E    KD  Q
Sbjct:  287 QQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKDALQ 391          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH077_ARATH (Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.406e-34
Identity = 72/91 (79.12%), Postives = 82/91 (90.11%), Query Frame = 2
Query:   53 EQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRM 325
            + +++PPE PK DYIHVRARRGQATDSHSLA RARREKISERM +LQDLVPGCN++ GKA++LDEIINY+QSLQRQVEFLSMKL  VN RM
Sbjct:  176 KDDAKPPEAPK-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH074_ARATH (Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.406e-34
Identity = 73/122 (59.84%), Postives = 92/122 (75.41%), Query Frame = 2
Query:    2 DNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQ 367
            D    K + + S     +++SQ  E PK++YIH+RARRGQAT+SHSLA R RREKISERM++LQ+LVPGCNK+ GKA++LDEIINY+QSLQ+QVEFLSMKL  VN  +N  I+    KD  Q
Sbjct:  173 DQSQKKHKNDQSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQ 294          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH076_ARATH (Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.316e-32
Identity = 72/127 (56.69%), Postives = 87/127 (68.50%), Query Frame = 2
Query:    2 DNHHSKAEAEPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDFTQQTFDT 382
            D      ++  S+        QP +  K  YIH+RARRGQAT+SHSLA R RREKISERMK LQDLVPGC+KV GKA++LDEIINY+QSLQ Q+EFLSMKL AVN  ++  +E    KD  Q +  T
Sbjct:  190 DKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKDALQSSAPT 316          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 3.242e-31
Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = 2
Query:   29 EPSSVKPAEQNSQPPEPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDF 361
            E SS    E +    E  K DYIHVRARRGQATD HSLA RARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL  +N  +   +E    K F
Sbjct:  161 EASSDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELELAVEDVSVKQF 271          
BLAST of CX288730 vs. ExPASy Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 9.432e-31
Identity = 66/83 (79.52%), Postives = 72/83 (86.75%), Query Frame = 2
Query:   74 EPPKQDYIHVRARRGQATDSHSLAXRARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTR 322
            E  K DYIHVRARRGQATDSHS+A R RREKISERMK LQDLVPGC+K+ GKA +LDEIINY+QSLQRQ+EFLSMKL  VN R
Sbjct:  163 ELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245          
The following BLAST results are available for this feature:
BLAST of CX288730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
BPE_ARATH6.085e-4685.96Transcription factor BPE OS=Arabidopsis thaliana G... [more]
BH079_ARATH6.297e-4361.11Transcription factor bHLH79 OS=Arabidopsis thalian... [more]
BH078_ARATH3.953e-3767.50Transcription factor bHLH78 OS=Arabidopsis thalian... [more]
BH062_ARATH3.953e-3767.24Transcription factor bHLH62 OS=Arabidopsis thalian... [more]
BH049_ARATH2.169e-3571.43Transcription factor bHLH49 OS=Arabidopsis thalian... [more]
BH077_ARATH1.406e-3479.12Transcription factor bHLH77 OS=Arabidopsis thalian... [more]
BH074_ARATH1.406e-3459.84Transcription factor bHLH74 OS=Arabidopsis thalian... [more]
BH076_ARATH1.316e-3256.69Transcription factor bHLH76 OS=Arabidopsis thalian... [more]
BH064_ARATH3.242e-3163.96Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BH063_ARATH9.432e-3179.52Transcription factor bHLH63 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC02003G04SK IF1 Citrus clementina cDNA clone C02003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288730 ID=CX288730; Name=CX288730; organism=Citrus clementina; type=EST; length=532bp
TGACAATCACCATTCCAAAGCTGAAGCAGAGCCCAGTTCGGTCAAGCCTG
CTGAACAAAATAGTCAACCACCGGAGCCTCCTAAACAGGATTACATCCAT
GTACGAGCAAGAAGGGGCCAAGCTACTGATAGCCACAGTTTAGCANAAAG
AGCTAGGAGAGAAAAGATAAGCGAAAGGATGAAAATTCTCCAGGACTTGG
TTCCTGGTTGTAACAAGGTCATCGGCAAAGCATTGGTCCTGGATGAGATA
ATTAACTACATCCAATCGCTACAGCGGCAGGTTGAGTTTCTGTCAATGAA
GCTTGAAGCAGTCAATACAAGAATGAACCCTGGCATTGAGGTATTTCCTC
CTAAAGATTTTACTCAACAAACATTTGATACTGCGGGCATGCCATTTGGT
TCTCAAGCTACAAGAGAATACAGCCGTGGTACATCACCCGACTGGTTGCA
TATGCAGATTGGAGGCGGTTTTGAAAGAATGACATAAAAAGATAGAATAA
TTCTTGTCAGTTAATAACAGATTAATGCATTA
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