CX288732

Overview
NameCX288732
Unique NameCX288732
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9750 contig Ccv1_Contig9750:57..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 6.020e-59
Identity = 119/158 (75.32%), Postives = 125/158 (79.11%), Query Frame = 2
Query:  116 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            M  RLFGKPKQE NAL TLD                          AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID VDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL
Sbjct:    1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDEL 158          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.141e-56
Identity = 117/156 (75.00%), Postives = 122/156 (78.21%), Query Frame = 2
Query:  125 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 592
            RLFGKPKQET+ L TLD                          AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNID VDKTMDEINEQTENMKQIQEALS P G A DFDEDELE
Sbjct:    5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFDEDELE 159          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 2
Query:  254 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 592
            AK   ++ NK  A   LK+K+LYE Q+++L +    +  Q+  +E A    ET+ A++ GAS MK + K  ++D VD TMDEI EQ E  ++I EA+S P+    + DEDEL+
Sbjct:   48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPLILQDELDEDELD 160          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E  ++I +A+S P+G   +FDEDEL
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVGFGEEFDEDEL 162          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MK   +  +ID VD  M +I EQ E  ++I +A+S P+G   +FDEDEL
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFDEDEL 162          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G   DFDEDEL
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDEL 162          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +I+ VD+ M +I +Q E  ++I +A+S P+G   DFDEDEL
Sbjct:   58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDEL 162          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  278 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            NKR A+  LKRK+++E ++ ++   +  I  Q+  ++ A    ET+ A+R GA  MK++Q+  + D VD+ MD+I +Q    ++I   +STP+G  A+ DEDEL
Sbjct:   56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDEL 159          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I EQ E   +I  A+S P+G   +FDEDEL
Sbjct:   62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFDEDEL 166          
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589
            KNKRAA+Q LKRK+ YE+Q+ Q+      I  Q   LE A   TE +  +   A  MKA     +ID VD+ M +I +Q E  ++I  A+S P+G   +FDEDEL
Sbjct:   60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDEL 164          
The following BLAST results are available for this feature:
BLAST of CX288732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
VP322_ARATH6.020e-5975.32Vacuolar protein sorting-associated protein 32 hom... [more]
VP321_ARATH2.141e-5675.00Vacuolar protein sorting-associated protein 32 hom... [more]
SNF7_KLULA2.166e-1640.71Vacuolar-sorting protein SNF7 OS=Kluyveromyces lac... [more]
CHM4B_DANRE2.166e-1643.81Charged multivesicular body protein 4b OS=Danio re... [more]
CHM4C_DANRE3.695e-1642.86Charged multivesicular body protein 4c OS=Danio re... [more]
CHM4B_XENTR4.825e-1642.86Charged multivesicular body protein 4b OS=Xenopus ... [more]
CHM4B_XENLA4.825e-1642.86Charged multivesicular body protein 4b OS=Xenopus ... [more]
SNF7_SCHPO6.302e-1637.50Vacuolar-sorting protein snf7 OS=Schizosaccharomyc... [more]
CHM4B_CHICK8.231e-1643.81Charged multivesicular body protein 4b OS=Gallus g... [more]
CHM4B_MOUSE1.075e-1542.86Charged multivesicular body protein 4b OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC02003G06SK IF1 Citrus clementina cDNA clone C02003G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288732 ID=CX288732; Name=CX288732; organism=Citrus clementina; type=EST; length=592bp
AGATCTCTACCGATTGTATCTTTTAATAAAGTCAGAATCCCATTTTTTTT
TTCCCTCATTTTTATAATTACAGAGGTAAAATCGAGGGTTTTTGATTAAT
CGCGGAGAATCAAACATGTTTACTCGGCTTTTTGGAAAACCTAAACAGGA
AACCAATGCCTTAACCACGCTCGATAAGCTAAATGAAACTCTTGAAATGC
TAGAGAAAAAGGAGAAAGTACTCCTGAAAAAGGCTTCTGTAGAGGTTGAA
AAGGCCAAGGACTACTCCAAAGCAAAGAACAAAAGAGCGGCCATACAATG
TTTGAAGAGGAAGAGGCTATACGAACAGCAAATAGAGCAGCTTGGGAATT
TCCAATTGCGCATTCATGATCAGATGATAATGCTAGAAGGTGCTAAAGCC
ACAACTGAGACTGTAGATGCATTGAGGACGGGAGCATCGACNATGAAGGC
TATGCAGAAAGCAACGAACATAGATNATGTGGATAAGACCATGGATGAGA
TCAATGAGCAGACCGAGAACATGAAGCAGATTCAAGAAGCATTATCAACT
CCTATTGGTGCTGCTGCTGATTTCGATGAGGATGAATTGGAA
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