CX288732
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: VP322_ARATH (Vacuolar protein sorting-associated protein 32 homolog 2 OS=Arabidopsis thaliana GN=VPS32.2 PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 6.020e-59 Identity = 119/158 (75.32%), Postives = 125/158 (79.11%), Query Frame = 2 Query: 116 MFTRLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 M RLFGKPKQE NAL TLD AK+YS+AKNKRAAIQCLKRKRLYE Q+EQLGNFQLRIHDQMIMLEGAKATTETVDALR+GAS MKAMQKATNID VDKTMDEINEQTENMKQIQEAL+TP+GAAADFDEDEL Sbjct: 1 MMNRLFGKPKQEANALQTLDKLNETLEMLEKKEKVLLKKAGAEVEKAKEYSRAKNKRAAIQCLKRKRLYEGQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRSGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALATPMGAAADFDEDEL 158
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: VP321_ARATH (Vacuolar protein sorting-associated protein 32 homolog 1 OS=Arabidopsis thaliana GN=VPS32.1 PE=2 SV=1) HSP 1 Score: 218.394 bits (555), Expect = 2.141e-56 Identity = 117/156 (75.00%), Postives = 122/156 (78.21%), Query Frame = 2 Query: 125 RLFGKPKQETNALTTLDXXXXXXXXXXXXXXXXXXXXXXXXXXAKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 592 RLFGKPKQET+ L TLD AK++S+AKNKRAAIQCLKRKRLYEQQ+EQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAS MKAMQKATNID VDKTMDEINEQTENMKQIQEALS P G A DFDEDELE Sbjct: 5 RLFGKPKQETSTLQTLDKLNETLEMLEKKENVLLKKATGEVEKAKEFSRAKNKRAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPFG-ANDFDEDELE 159
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: SNF7_KLULA (Vacuolar-sorting protein SNF7 OS=Kluyveromyces lactis GN=SNF7 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16 Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 2 Query: 254 AKDYSKAKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDELE 592 AK ++ NK A LK+K+LYE Q+++L + + Q+ +E A ET+ A++ GAS MK + K ++D VD TMDEI EQ E ++I EA+S P+ + DEDEL+ Sbjct: 48 AKKSLQSGNKNNAKTYLKKKKLYESQLDKLQSQIDSLDQQLYSIENANLNLETLKAMKQGASAMKNIHKGLDLDKVDDTMDEIREQVELNQEISEAISKPLILQDELDEDELD 160
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_DANRE (Charged multivesicular body protein 4b OS=Danio rerio GN=chmp4b PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.166e-16 Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I EQ E ++I +A+S P+G +FDEDEL Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENAHTNTEVIKNMGYAAKAMKAAHDNMDIDKVDELMQDIIEQQELAQEISDAISKPVGFGEEFDEDEL 162
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4C_DANRE (Charged multivesicular body protein 4c OS=Danio rerio GN=chmp4c PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.695e-16 Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MK + +ID VD M +I EQ E ++I +A+S P+G +FDEDEL Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKTAHENMDIDKVDDLMQDITEQQELAQEISDAISRPVGFGEEFDEDEL 162
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_XENTR (Charged multivesicular body protein 4b OS=Xenopus tropicalis GN=chmp4b PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16 Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+G DFDEDEL Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDEL 162
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_XENLA (Charged multivesicular body protein 4b OS=Xenopus laevis GN=chmp4b PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16 Identity = 45/105 (42.86%), Postives = 62/105 (59.05%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +I+ VD+ M +I +Q E ++I +A+S P+G DFDEDEL Sbjct: 58 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIEKVDELMQDIADQQELAQEISDAISKPVGFGEDFDEDEL 162
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: SNF7_SCHPO (Vacuolar-sorting protein snf7 OS=Schizosaccharomyces pombe GN=snf7 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16 Identity = 39/104 (37.50%), Postives = 65/104 (62.50%), Query Frame = 2 Query: 278 NKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 NKR A+ LKRK+++E ++ ++ + I Q+ ++ A ET+ A+R GA MK++Q+ + D VD+ MD+I +Q ++I +STP+G A+ DEDEL Sbjct: 56 NKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISEEISTMISTPVGLNAEIDEDEL 159
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_CHICK (Charged multivesicular body protein 4b OS=Gallus gallus GN=CHMP4B PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16 Identity = 46/105 (43.81%), Postives = 60/105 (57.14%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I EQ E +I A+S P+G +FDEDEL Sbjct: 62 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGFAAKAMKAAHDNMDIDKVDELMQDIAEQQELADEISTAISKPVGFGEEFDEDEL 166
BLAST of CX288732 vs. ExPASy Swiss-Prot
Match: CHM4B_MOUSE (Charged multivesicular body protein 4b OS=Mus musculus GN=Chmp4b PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15 Identity = 45/105 (42.86%), Postives = 61/105 (58.10%), Query Frame = 2 Query: 275 KNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGASTMKAMQKATNIDXVDKTMDEINEQTENMKQIQEALSTPIGAAADFDEDEL 589 KNKRAA+Q LKRK+ YE+Q+ Q+ I Q LE A TE + + A MKA +ID VD+ M +I +Q E ++I A+S P+G +FDEDEL Sbjct: 60 KNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDEL 164 The following BLAST results are available for this feature:
BLAST of CX288732 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 32
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288732 ID=CX288732; Name=CX288732; organism=Citrus clementina; type=EST; length=592bpback to top |