CX288736

Overview
NameCX288736
Unique NameCX288736
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length532
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 1.707e-56
Identity = 116/169 (68.64%), Postives = 135/169 (79.88%), Query Frame = 1
Query:   28 AGASSVWML-NQSSFLGSCQQLSSVSKLVXXXXXXXXXXXLFIVEASTRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +G  SV ++ N+S+FLG+  Q  +V   +             +VEA T+  T  EDR ARHSRI+KK++GT ERPRLCVFRSNKHLYVQVIDDTKMHTLASAST QKPIS+E DY+SGPTIEV+KKVGE+IAKSCLEKGITKVAFDRGGYPYHGRI+ALA AARE+GLQ
Sbjct:    5 SGCGSVSLITNRSAFLGNGLQHRAV--FLKPWSSSSLQSRSMVVEAKTK--TSSEDRIARHSRIRKKVNGTTERPRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGITKVAFDRGGYPYHGRIEALAAAAREHGLQ 169          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.787e-45
Identity = 87/126 (69.05%), Postives = 104/126 (82.54%), Query Frame = 1
Query:  151 IVEASTRPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            +V A  +  T + DR ARH R++KK+ GT ERPRL VFRSNKHLY QVIDDTK  TL SASTM K +S +L+YS+GPT+EV++K+GE+IAKSCLEKGITKV FDRGG+ YHGRI+ALADAARE GL
Sbjct:   43 VVVAKVKVSTPQADRIARHVRLRKKVSGTTERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIAKSCLEKGITKVVFDRGGFLYHGRIKALADAARENGL 168          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +  +K+E R  RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +  +K+E R  RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima GN=rplR PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 8.243e-35
Identity = 70/121 (57.85%), Postives = 90/121 (74.38%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +  +K+E R  RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    +E +K+VG +I K  LEKGI KV FDRGGY YHGR++ALAD ARE GL+
Sbjct:    3 KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOKA (50S ribosomal protein L18 OS=Geobacillus kaustophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.343e-34
Identity = 73/113 (64.60%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDTKSSTIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_THENN (50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.978e-34
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1
Query:  169 RPRTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            +  ++ E R  RH R++KK+ GTPERPRLCVFRSNKH+Y Q+IDDT  HTL SAST+   + ++L  +    IE +K+VG +I K  +EKGI KV FDRGGY YHGR++ALAD ARE GL+
Sbjct:    3 KKESRNERRIRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTW--NIEAAKEVGLLIGKRAIEKGIKKVVFDRGGYKYHGRVKALADGAREAGLE 121          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.555e-33
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH+R++KKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E D  S   IE +KKVGE++AK  LEKGI KV FDRGGY YHGR++ALADAARE GL+
Sbjct:   11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAKRALEKGIKKVVFDRGGYLYHGRVKALADAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.030e-33
Identity = 72/113 (63.72%), Postives = 85/113 (75.22%), Query Frame = 1
Query:  193 RTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQ 531
            R  RH+RI+KKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK  LEKGI +V FDRGGY YHGR++ALADAARE GL+
Sbjct:   11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAKRALEKGIKQVVFDRGGYLYHGRVKALADAAREAGLE 119          
BLAST of CX288736 vs. ExPASy Swiss-Prot
Match: RL18_CYAP7 (50S ribosomal protein L18 OS=Cyanothece sp. (strain PCC 7424) GN=rplR PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.463e-33
Identity = 70/118 (59.32%), Postives = 86/118 (72.88%), Query Frame = 1
Query:  175 RTKREDRTARHSRIKKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 528
            RT+ E    RHSRI++K++GTP RPRL VFRSN H+Y QVIDD   HTL +AST+ K +  E  +SSG T E S+ VG+++A+  L KGI KV FDRGG  YHGRI+ALA AARE GL
Sbjct:    3 RTRTESVQRRHSRIRRKVEGTPSRPRLAVFRSNNHIYAQVIDDVAQHTLVAASTLDKDLKGE--FSSGATCEASEAVGKLVAQRALAKGIEKVVFDRGGNLYHGRIRALAQAAREAGL 118          
The following BLAST results are available for this feature:
BLAST of CX288736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK18_ARATH1.707e-5668.6450S ribosomal protein L18, chloroplastic OS=Arabid... [more]
RK18_ORYSJ8.787e-4569.0550S ribosomal protein L18, chloroplastic OS=Oryza ... [more]
RL18_THESQ8.243e-3557.8550S ribosomal protein L18 OS=Thermotoga sp. (strai... [more]
RL18_THEP18.243e-3557.8550S ribosomal protein L18 OS=Thermotoga petrophila... [more]
RL18_THEMA8.243e-3557.8550S ribosomal protein L18 OS=Thermotoga maritima G... [more]
RL18_GEOKA5.343e-3464.6050S ribosomal protein L18 OS=Geobacillus kaustophi... [more]
RL18_THENN6.978e-3457.0250S ribosomal protein L18 OS=Thermotoga neapolitan... [more]
RL18_GEOSW1.555e-3363.7250S ribosomal protein L18 OS=Geobacillus sp. (stra... [more]
RL18_BACST2.030e-3363.7250S ribosomal protein L18 OS=Bacillus stearothermo... [more]
RL18_CYAP73.463e-3359.3250S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02003G12SK IF1 Citrus clementina cDNA clone C02003G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288736 ID=CX288736; Name=CX288736; organism=Citrus clementina; type=EST; length=532bp
GAAAGTGTAAGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGAT
GCTTAATCAGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTT
CAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTC
ATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGC
CCGCCATTCTCGCATCAAAAAGAAGATTGATGGGACTCCTGAGAGGCCGA
GGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGAT
GATACTAAGATGCACACACTTGCTTCAGCTTCGACGATGCAAAAGCCCAT
CTCTGACGAGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGA
AGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGAAAGGGATCACAAAA
GTAGCCTTTGATCGAGGTGGGTACCCATACCATGGACGGATACAAGCCCT
AGCCGATGCAGCTCGGGAATATGGTCTTCAAT
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