CX288814

Overview
NameCX288814
Unique NameCX288814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length325
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TOM20_SOLTU (Mitochondrial import receptor subunit TOM20 OS=Solanum tuberosum GN=TOM20 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.793e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL--XXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            ++P KH  LW LGNAHTS  FLT D+ EAK  F+KA++CFQ+A D +P+N+LY+KSLEV+ KAPELHME+H+HG  QQT+                   DLKYDIFGWVI
Sbjct:   70 VNPEKHDALWCLGNAHTSHVFLTPDMDEAKVYFEKATQCFQQAFDADPSNDLYRKSLEVTAKAPELHMEIHRHGPMQQTMAAEPSTSTSTKSSKKTKSSDLKYDIFGWVI 179          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSI (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. indica GN=TOM20 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 7.796e-24
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                  D  YD+FGWV+
Sbjct:   72 IDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKDSDFWYDVFGWVV 179          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TOM20_ORYSJ (Probable mitochondrial import receptor subunit TOM20 OS=Oryza sativa subsp. japonica GN=TOM20 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.470e-22
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT-LXXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            IDP K   LW LGNA TS GF T+D  +A   F+KA++CFQ+AVD EP N+LY+KSL++S+KAPELHME+H+   +Q +                   D  YD+FGWV+
Sbjct:   72 IDPMKADALWCLGNAQTSHGFFTSDTVKANEFFEKATQCFQKAVDVEPANDLYRKSLDLSSKAPELHMEIHRQMASQASQAASSTSNTRQSRKKKKDSDFWYDVFGWVV 180          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TO203_ARATH (Mitochondrial import receptor subunit TOM20-3 OS=Arabidopsis thaliana GN=TOM20-3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.229e-20
Identity = 50/111 (45.05%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL---XXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            IDP K   +W +GNA+TS  FLT D +EAK +FD A++ FQ+AVDE+P N  Y KSLE++ KAP+LH E +K G+  Q +                    D KYD  GWVI
Sbjct:   70 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGLGSQPMGRVEAPAPPSSKAVKNKKSSDAKYDAMGWVI 180          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TO204_ARATH (Mitochondrial import receptor subunit TOM20-4 OS=Arabidopsis thaliana GN=TOM20-4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.551e-19
Identity = 48/108 (44.44%), Postives = 64/108 (59.26%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLXXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            IDP KH  LW +GNAH S GFL++D +EA  +F+KAS+ FQ AV+E+P +ELY+KSL +++KAPELH                              + KYD+FGWVI
Sbjct:   68 IDPKKHDALWLIGNAHLSFGFLSSDQTEASDNFEKASQFFQLAVEEQPESELYRKSLTLASKAPELHTG---------GTAGPSSNSAKTMKQKKTSEFKYDVFGWVI 166          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TO202_ARATH (Mitochondrial import receptor subunit TOM20-2 OS=Arabidopsis thaliana GN=TOM20-2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 47/118 (39.83%), Postives = 62/118 (52.54%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL----------XXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            I+P KH  LW + NA+T+  F   D  EAK  FDKA+E FQRA +E+P N+ Y+KSL+ S KAPELHM+    G+ QQ L                           +  YD+ GW+I
Sbjct:   71 INPGKHQALWCIANAYTAHAFYVHDPEEAKEHFDKATEYFQRAENEDPGNDTYRKSLDSSLKAPELHMQFMNQGMGQQILGGGGGGGGGGMASSNVSQSSKKKKRNTEFTYDVCGWII 188          
BLAST of CX288814 vs. ExPASy Swiss-Prot
Match: TO201_ARATH (Mitochondrial import receptor subunit TOM20-1 OS=Arabidopsis thaliana GN=TOM20-1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.191e-13
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2
Query:    2 IDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT--LXXXXXXXXXXXXXXXXXDLKYDIFGWVI 325
            IDP KH  +W LGNA+TS   LT D ++A+ +F  A   F  AV ++P N++Y KSLE++ KAP+LH   HK+ +      +                 D KY + GWVI
Sbjct:   64 IDPMKHDAVWCLGNAYTSYARLTPDDTQARLNFGLAYLFFGIAVAQQPDNQVYHKSLEMADKAPQLHTGFHKNRLLSLLGGVETLAIPSPKVVKNKKSSDEKYIVMGWVI 173          
The following BLAST results are available for this feature:
BLAST of CX288814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TOM20_SOLTU1.793e-2855.45Mitochondrial import receptor subunit TOM20 OS=Sol... [more]
TOM20_ORYSI7.796e-2448.15Probable mitochondrial import receptor subunit TOM... [more]
TOM20_ORYSJ1.470e-2247.71Probable mitochondrial import receptor subunit TOM... [more]
TO203_ARATH5.229e-2045.05Mitochondrial import receptor subunit TOM20-3 OS=A... [more]
TO204_ARATH7.551e-1944.44Mitochondrial import receptor subunit TOM20-4 OS=A... [more]
TO202_ARATH1.090e-1739.83Mitochondrial import receptor subunit TOM20-2 OS=A... [more]
TO201_ARATH6.191e-1338.18Mitochondrial import receptor subunit TOM20-1 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionC02004F12SK IF1 Citrus clementina cDNA clone C02004F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288814 ID=CX288814; Name=CX288814; organism=Citrus clementina; type=EST; length=325bp
GATAGATCCTGCAAAGCATTATACTTTATGGAGTCTCGGAAATGCTCACA
CCTCTTGTGGATTTTTGACTGCCGATCTCTCTGAGGCAAAAGGTGATTTT
GATAAGGCGTCAGAGTGTTTCCAAAGAGCAGTAGATGAGGAACCAACTAA
TGAGCTCTATCAGAAATCTTTAGAAGTCAGTACTAAGGCACCGGAACTGC
ACATGGAGCTCCATAAACATGGAATTAATCAGCAGACTCTTGGTGGAGGA
TCTTCTGCTTCTAATGCACAGAGTTCCAAGAAGAAGAGCAGTGATCTAAA
GTACGATATATTTGGATGGGTAATC
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