CX288833

Overview
NameCX288833
Unique NameCX288833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_ELAUM (Chalcone--flavonone isomerase OS=Elaeagnus umbellata GN=CHI PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.691e-13
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 2
Query:   68 TMGTEVVMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            T     V V+ + FPP++    ++K L L G G+  IEI    IKFTAIGVYL+   +  L  +WKGK    L +  +FF  +V+ P+EKF R+  I  + G QY
Sbjct:    5 TKSVTEVQVESVIFPPEVKPPGSSKTLFLGGAGVRGIEIQGKFIKFTAIGVYLEDNAVPSLAVKWKGKSAQELTESVEFFRDIVTGPMEKFTRVTTILPLTGQQY 109          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI3_SOYBN (Chalcone--flavonone isomerase 3 OS=Glycine max GN=CHI3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.542e-12
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   86 VMVDEIPFPPQITTTKPLN---LLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+ + FPP +      N   L G G+  ++IH   +KFTAI VYL  + LS L  +WK K    L + D FF  +V+ P EKF ++ +IK + G QY
Sbjct:    9 VTVENVTFPPTVKPPCSPNTFFLAGAGVRGLQIHHAFVKFTAICVYLQYDALSFLSVKWKTKSTHQLTESDQFFSDIVTGPFEKFMQVTMIKPLTGQQY 107          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_EUSGR (Chalcone--flavonone isomerase OS=Eustoma grandiflorum GN=CHI PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+   FPP IT   +TK   L G G+  +EI    +KFTAIG+YLD   +  L  +WKGK    LA   DFF  +++ P EKF ++ +I  + G QY
Sbjct:   10 VQVESYLFPPTITPPASTKSFLLGGAGVRGLEIGGNFVKFTAIGIYLDETAIPWLAGKWKGKTAEELADSVDFFADIITGPFEKFTQVTLILPLTGQQY 108          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI2A_SOYBN (Chalcone--flavonone isomerase 2-A OS=Glycine max GN=CHI2-A PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.321e-12
Identity = 38/99 (38.38%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   86 VMVDEIPFPPQITTTKPLN---LLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+ + FPP +      N   L G G+  ++IH   +KFTAI +YL  + LS L  +WK K    L + D FF  +V+ P EKF ++ +IK + G QY
Sbjct:    9 VTVENVTFPPTVKPPCSPNTFFLAGAGVRGLQIHHAFVKFTAICIYLQYDALSFLSVKWKTKSTHQLTESDQFFSDIVTGPFEKFMQVTMIKPLTGQQY 107          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_VERHY (Chalcone--flavonone isomerase OS=Verbena hybrida GN=CHI PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+ + FPP +    + K   L G G+  +EI    IKFTAIGVYL+ + ++ L  +WKGK    +A   DFF  +V+ P EKF ++  I  + G QY
Sbjct:   10 VQVESVVFPPAVKPPGSDKTFFLGGAGVRGLEIEGKFIKFTAIGVYLENDAVTSLAAKWKGKTAEEVADSGDFFAEIVTGPFEKFTKVTTILPLTGQQY 108          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_CANGE (Chalcone--flavonone isomerase OS=Canna generalis GN=CHI PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 40/104 (38.46%), Postives = 59/104 (56.73%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHL-QQWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQYGVQLE 385
            +++ E+ FPP      ++  L L G G   +EI    + FTAIGVYL+   +S L  +WKGK    LA + DFF  + + P EKF RI ++K + G QY  ++E
Sbjct:   11 LVIGEVTFPPAAAPPGSSSSLFLAGAGERGLEIDRQFVVFTAIGVYLEDLAVSTLGPKWKGKTADDLAGNSDFFRDIFTGPFEKFTRITMVKPLSGQQYSEKVE 114          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_CAMSI (Chalcone--flavonone isomerase OS=Camellia sinensis GN=CHI PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 5.664e-12
Identity = 41/99 (41.41%), Postives = 54/99 (54.55%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V ++   FPP +    T+KP  L G G   +EI    IKFTAIGVYL+   +  L  +WKGK    L    DFF  +VS P EKF ++ +I  + G QY
Sbjct:   12 VQIESHVFPPTVKPPGTSKPFFLGGAGERGLEIQGKFIKFTAIGVYLEDSAIPSLAVKWKGKTAEELTDSVDFFRDIVSGPFEKFTQVTMILPLTGQQY 110          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI2_VITVI (Chalcone--flavonone isomerase 2 OS=Vitis vinifera GN=CHI2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.152e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+ + FPP +    +T  L L G G+  +EI    +KFTAIGVYL+   +  L  +WKGK    LA   DFF  +V+ P EKF ++  I  + G QY
Sbjct:   10 VQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLESSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQY 108          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI1_VITVI (Chalcone--flavonone isomerase 1 OS=Vitis vinifera GN=CHI1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.811e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 2
Query:   86 VMVDEIPFPPQIT---TTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+ + FPP +    +T  L L G G+  +EI    +KFTAIGVYL+   +  L  +WKGK    LA   DFF  +V+ P EKF ++  I  + G QY
Sbjct:   10 VQVENVLFPPSVKPPGSTNDLFLGGAGVRGLEIQGKFVKFTAIGVYLENSAVPTLAVKWKGKTVEELADSVDFFRDVVTGPFEKFTKVTTILPLTGRQY 108          
BLAST of CX288833 vs. ExPASy Swiss-Prot
Match: CFI_GENTR (Chalcone--flavonone isomerase OS=Gentiana triflora GN=CHI PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 37/99 (37.37%), Postives = 58/99 (58.59%), Query Frame = 2
Query:   86 VMVDEIPFPPQI---TTTKPLNLLGHGLTDIEIHFLQIKFTAIGVYLDPEILSHLQ-QWKGKQGSSLAQDDDFFDALVSAPVEKFFRIVVIKEIKGSQY 370
            V V+   FPP +   ++TK   L G G+  +EI+   +KFTAIGVYL+   ++ L  +WKGK    L+   +FF  +++ P EKF ++ +I  + G QY
Sbjct:   12 VKVESYVFPPSVKPPSSTKSFLLGGAGVRGLEINGNFVKFTAIGVYLEESGVAVLSGKWKGKTAEELSDSVEFFTDIITGPFEKFTQVTLILPVTGQQY 110          
The following BLAST results are available for this feature:
BLAST of CX288833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CFI_ELAUM6.691e-1340.00Chalcone--flavonone isomerase OS=Elaeagnus umbella... [more]
CFI3_SOYBN2.542e-1239.39Chalcone--flavonone isomerase 3 OS=Glycine max GN=... [more]
CFI_EUSGR3.321e-1241.41Chalcone--flavonone isomerase OS=Eustoma grandiflo... [more]
CFI2A_SOYBN3.321e-1238.38Chalcone--flavonone isomerase 2-A OS=Glycine max G... [more]
CFI_VERHY5.664e-1239.39Chalcone--flavonone isomerase OS=Verbena hybrida G... [more]
CFI_CANGE5.664e-1238.46Chalcone--flavonone isomerase OS=Canna generalis G... [more]
CFI_CAMSI5.664e-1241.41Chalcone--flavonone isomerase OS=Camellia sinensis... [more]
CFI2_VITVI2.152e-1140.40Chalcone--flavonone isomerase 2 OS=Vitis vinifera ... [more]
CFI1_VITVI2.811e-1140.40Chalcone--flavonone isomerase 1 OS=Vitis vinifera ... [more]
CFI_GENTR4.795e-1137.37Chalcone--flavonone isomerase OS=Gentiana triflora... [more]
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Properties
Property NameValue
Genbank descriptionC02004H09SK IF1 Citrus clementina cDNA clone C02004H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288833 ID=CX288833; Name=CX288833; organism=Citrus clementina; type=EST; length=530bp
GAATTCGGCACGAGGGTTTCTTTTTCTCCCTACTTCATCATTTTCCAATA
GTTTCCCACTAAAGATTACCATGGGCACTGAAGTTGTAATGGTGGATGAA
ATCCCATTTCCTCCTCAGATCACCACCACCAAGCCGTTGAACCTTCTGGG
TCATGGTTTAACAGACATTGAGATACACTTTCTCCAAATCAAGTTCACGG
CAATTGGAGTCTACTTGGATCCTGAAATTTTGAGTCACTTGCAACAGTGG
AAGGGCAAACAGGGAAGTTCCCTTGCACAAGATGATGACTTCTTTGATGC
TCTTGTCTCTGCTCCAGTAGAGAAATTTTTTAGAATTGTTGTGATCAAGG
AGATCAAGGGGTCACAATATGGGGTTCAGTTAGAAAGTGCGGTGAGGGAC
AGATTGGCCGAAGCTGACAAATATGAAGAAGAGGAAGAATCTGCCCTTGA
GAAAATCGTTGAATTCTTCCAATCCAAGTATTTTAAGAAGGACTCTGTGA
TTGCTTATCATTTTCCGGCAACATCCCCTA
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