CX288843

Overview
NameCX288843
Unique NameCX288843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.525e-23
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 2
Query:   14 LNAGVTNLDSDNGAAGNS---GVGGITERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQ 259
            +NAG  N+ SDNGA  N    G G  +   SGN+ DE  ++QREAALTKFRQKRKERCF K+VRYQSRKKLAEQRPRVRGQFVR+
Sbjct:  627 MNAGGMNMGSDNGAGKNGNGDGSGSGSGSGSGNLADENKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRK 711          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   11 ALNAGVTNLDSDNGAAGNSGVGGI--TERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 289
            A N G  N+++ NG    +G GG   +   SGN + +  V  REAAL KFRQKRK R FGK+VRYQSRK+LAEQRPR+RGQFVRQ   +  +G+D
Sbjct:  670 APNVGRPNMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQD 764          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.629e-19
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 2
Query:   11 ALNAGVTNLDSDNGAAGNSGVGGI--TERISGNVVDEVWVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 289
            A N G  N+++ NG    +G GG   +   SGN + +  V  REAAL KFRQKRK R FGK+VRYQSRK+LAEQRPR+RGQFVRQ   +  +G+D
Sbjct:  670 APNVGRPNMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQEDQAGQD 764          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   11 ALNAGVTNLDSDNGAAGNSGVGGITERISGNVVDEVW--VAQRE---AALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSD---ANSGKDTASN 301
            A+NA   N++  NG    SG GG     SG+  D       QRE   AA+ KFRQKRKER FGK+VRYQSRK+LAEQRPRVRGQFVRQ   D      G++ A++
Sbjct:  637 AVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQDQQQQGGGREAAAD 741          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSI (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.103e-17
Identity = 55/105 (52.38%), Postives = 66/105 (62.86%), Query Frame = 2
Query:   11 ALNAGVTNLDSDNGAAGNSGVGGITERISGNVVDEVW--VAQRE---AALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSD---ANSGKDTASN 301
            A+NA   N++  NG    SG GG     SG+  D       QRE   AA+ KFRQKRKER FGK+VRYQSRK+LAEQRPRVRGQFVRQ   D      G++ A++
Sbjct:  637 AVNAERPNMEIANGTINKSGPGGGNGSGSGSGNDMYLKRFTQREHRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQAVQDQQQQGGGREAAAD 741          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.959e-16
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = 2
Query:  125 AQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANS 280
            +QREAAL KFR KRK+RCF K+VRYQSRKKLAEQRPRV+GQFVR + SDA++
Sbjct:  415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSDAST 466          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 37/47 (78.72%), Postives = 44/47 (93.62%), Query Frame = 2
Query:  128 QREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPS 268
            QREAALTKFR KRK+RC+ K+VRY+SRKKLAEQRPR++GQFVRQ+ S
Sbjct:  508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 42/60 (70.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:   95 SGNVVDEV-----WVAQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQ 259
            S NVV E       ++QREAAL KFR KRK+RCF K+VRYQSRK LAEQRPRV+GQFVRQ
Sbjct:  557 SSNVVPENPDGLRHLSQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 2
Query:  125 AQREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKD 289
            AQREAAL KFR KRKERCF K+VRY SRKKLAEQRP V+GQF+R+     +  +D
Sbjct:  440 AQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKRDDHKSGSED 494          
BLAST of CX288843 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 42/68 (61.76%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  128 QREAALTKFRQKRKERCFGKRVRYQSRKKLAEQRPRVRGQFVRQLPSDANSGKDTASNGHTSEDNSSD 331
            +R AAL KFR KRKERCF K+VRY +RKKLAE RPRVRGQFVRQ    AN    T++    SED   D
Sbjct:  442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQ----ANYTDITSTGDDISEDEDDD 505          
The following BLAST results are available for this feature:
BLAST of CX288843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR7_ARATH1.525e-2368.24Two-component response regulator-like APRR7 OS=Ara... [more]
PRR73_ORYSJ6.629e-1954.74Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI6.629e-1954.74Two-component response regulator-like PRR73 OS=Ory... [more]
PRR37_ORYSJ8.103e-1752.38Two-component response regulator-like PRR37 OS=Ory... [more]
PRR37_ORYSI8.103e-1752.38Two-component response regulator-like PRR37 OS=Ory... [more]
APRR9_ARATH8.959e-1676.92Two-component response regulator-like APRR9 OS=Ara... [more]
APRR5_ARATH4.446e-1578.72Two-component response regulator-like APRR5 OS=Ara... [more]
PRR95_ORYSJ3.764e-1470.00Two-component response regulator-like PRR95 OS=Ory... [more]
APRR3_ARATH6.420e-1467.27Two-component response regulator-like APRR3 OS=Ara... [more]
PRR1_ORYSJ8.385e-1461.76Two-component response regulator-like PRR1 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionC02006A08SK IF1 Citrus clementina cDNA clone C02006A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288843 ID=CX288843; Name=CX288843; organism=Citrus clementina; type=EST; length=619bp
GCACGAGGCTGCCTTGAATGCTGGAGTAACAAATTTGGACAGTGACAATG
GGGCAGCAGGAAATAGTGGAGTTGGTGGCATAACTGAAAGAATCAGTGGA
AATGTGGTAGATGAAGTTTGGGTTGCTCAAAGAGAAGCTGCCTTGACTAA
ATTTCGCCAGAAAAGGAAAGAAAGGTGTTTCGGGAAGAGGGTTCGATATC
AAAGCCGGAAAAAATTGGCAGAACAAAGGCCACGTGTCAGGGGACAGTTT
GTTCGACAACTACCGTCAGATGCCAATTCAGGAAAAGATACCGCAAGCAA
CGGCCATACCTCTGAAGACAATTCTAGTGACAATCTAAGATAACATTGTG
GCAGTGCGGCAGATTTTTAAAATCAACCGTTAGTCCCTGATAGATCATGT
GAATTTGTGTACATTAGATTAGCATTAACTGTTCATGGTGGGAATGGGTT
GTCTTAAATTCTTAATTTGGGACTGGGTTGGAGATATTTTGTAGGCGCAT
TTGATCAATTTGAAACGAATTTTACGGAACCATGGTTCTGCCTTGATGGT
TGTAAACTTTTATGAACTCACTTAAGAGTTTCTTGAATGGATTAAACTCT
AAAAGCGTAAACAATAAAT
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