CX288863

Overview
NameCX288863
Unique NameCX288863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288863 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 50/148 (33.78%), Postives = 67/148 (45.27%), Query Frame = 1 
Query:   28 WTIGWDMNLLAAAYAGIVSSGIAYYVQGLVMQKRGPVFVTAFSPLMMIIVAIMGSFILAEKIYXXXXXXXXXXXXXXYAVLWGKYKEYE----ENKIETIPEPIKSCGEHGHTLAI--IDDIEANNHTQL-QKIESETNKPAVTISVP 450
            W I     L    YAG V+SGIA+ VQ   + + GPVFV  + P+  I VAIM S IL E+ Y              Y VLWGK +E      + K   +PE      +   TL I   + I+ N  + L Q +  +T+   V I  P
Sbjct:  257 WKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATLIINSSNGIKPNTSSSLTQPLLLDTSYKTVNIPSP 404
The following BLAST results are available for this feature:
BLAST of CX288863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA3.874e-1133.78Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC02006C07SK IF1 Citrus clementina cDNA clone C02006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288863 ID=CX288863; Name=CX288863; organism=Citrus clementina; type=EST; length=545bp
TTTGTGATGGAACACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAA
TCTTCTTGCTGCTGCTTATGCTGGTATTGTGTCATCAGGCATTGCTTACT
ATGTTCAAGGGCTGGTGATGCAAAAAAGAGGACCTGTCTTTGTAACCGCT
TTCAGCCCTCTGATGATGATCATTGTTGCAATTATGGGCTCTTTCATTCT
TGCTGAAAAGATATATGTTGGAGGTGCTCTTGGGGCAGTTGTGATAGTCA
TTGGACTCTACGCCGTGCTATGGGGGAAATACAAAGAATACGAAGAAAAT
AAAATAGAGACAATTCCTGAACCCATTAAAAGCTGTGGAGAACATGGACA
CACTTTAGCAATAATTGATGACATTGAAGCTAATAATCATACCCAACTGC
AAAAGATTGAAAGCGAGACCAATAAGCCGGCAGTGACTATCAGTGTTCCA
ATTCCAAAGCAATCCATGACAGCCATGGAAACACAGAAGGCTTAATCAAT
TAGTTCAGAGACTAGGGAGAAATTAAGAAAGACAAATGATAAGAG
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