CX288865

Overview
NameCX288865
Unique NameCX288865
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length506
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10952 contig Ccv1_Contig10952:590..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALA2_PANMI (Alanine aminotransferase 2 OS=Panicum miliaceum PE=1 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 4.090e-78
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVYV 506
            IL  IPGRATGAYSHSQGIKGLRD IAAGI +RDGFPA+ +DIF+TDGASP VHMMMQLLIR+E DGILCPIPQYPLYSASIALHGGTLVPYYLDE TGWGLE S++KKQLE A++KGI VRALVVINPGNPTGQVLAE+NQ  IV FCK EGLVLLADEVYQEN+YV
Sbjct:  100 ILSTIPGRATGAYSHSQGIKGLRDAIAAGIASRDGFPANADDIFVTDGASPGVHMMMQLLIRNEKDGILCPIPQYPLYSASIALHGGTLVPYYLDEKTGWGLEISDLKKQLEDARSKGIDVRALVVINPGNPTGQVLAEDNQCDIVRFCKNEGLVLLADEVYQENIYV 267          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALA2_HORVU (Alanine aminotransferase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 5.906e-77
Identity = 140/168 (83.33%), Postives = 154/168 (91.67%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVYV 506
            IL  IPGRATGAYSHSQGIKGLRD IA+GI +RDGFPA+ +DIFLTDGASP VH+MMQLLIR+E DGIL PIPQYPLYSASIALHGG LVPYYL+E+TGWGLETS+VKKQLE A+++GI VRALVVINPGNPTGQVLAEENQ  IV+FCK EGLVLLADEVYQEN+YV
Sbjct:  100 ILAMIPGRATGAYSHSQGIKGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYV 267          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAM_DICDI (Probable alanine aminotransferase, mitochondrial OS=Dictyostelium discoideum GN=gpt PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.676e-45
Identity = 91/159 (57.23%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   30 TGAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVYV 506
            TGAYS+SQGI  +  ++A  IE RDG  +DP++IFLTDGAS  V  +++LLI+  +DGIL PIPQYPLYSA+I L+ G+ + Y L+E  GW LE S+++     A +KGI  RALV+INPGNPTGQ L   N   IV+FC ++ +VLLADEVYQENVYV
Sbjct:  161 TGAYSNSQGIGLVLRSVADFIERRDGHKSDPSEIFLTDGASVGVQRILKLLIKDRSDGILIPIPQYPLYSATIELYNGSQLGYLLNEEKGWSLEISQLEHSYNDAVSKGINPRALVIINPGNPTGQCLDRANMEEIVKFCLEKNVVLLADEVYQENVYV 319          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT_SCHPO (Putative alanine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC582.08 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.421e-40
Identity = 79/157 (50.32%), Postives = 103/157 (65.61%), Query Frame = 3
Query:   33 GAYSHSQGIKGLRDTIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            GAYS SQGI  +R  +A  I ARDGF  +P+DI+LT GAS A  ++M L+I    DG++ P PQYPLY A I L  G++V Y L E   W ++  + KK  + A  KGI VR  VVINPGNPTG  ++E +   ++ F K +G+VLLADEVYQ N+Y
Sbjct:  134 GAYSASQGIPLVRRHVADFIRARDGFDCEPSDIYLTSGASHAARLIMTLIIARPTDGVMVPAPQYPLYGAQIDLMSGSMVSYSLSEENNWDIDFDQFKKSFDEASKKGINVRLCVVINPGNPTGACISENSMEKVLRFAKAKGIVLLADEVYQNNIY 290          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT_YEAST (Probable alanine aminotransferase OS=Saccharomyces cerevisiae GN=ALT2 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.888e-39
Identity = 79/162 (48.77%), Postives = 106/162 (65.43%), Query Frame = 3
Query:   21 GRATGAYSHSQGIKGLRDTIAAGIEARDGF-PADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            G + GAYSHSQG+ G+R T+A  I  RDG  PA P DI+LT GAS A   ++ LL +    G+L PIPQYPLY+AS +L    ++PYYLDE + W   + E++K ++ A  K I    L+VINPGNPTG VL+EE    I     K G+ +++DEVYQEN++
Sbjct:  130 GGSIGAYSHSQGVPGIRQTVADFITRRDGGEPATPEDIYLTTGASSAATSLLSLLCKDSQTGLLIPIPQYPLYTASASLFNAQVLPYYLDEESNWSTNSDEIEKVVQDALKKQIRPSVLIVINPGNPTGAVLSEETIARICLIAAKYGITIISDEVYQENIF 291          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT1_RAT (Alanine aminotransferase 1 OS=Rattus norvegicus GN=Gpt PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.426e-38
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            IL    G + GAYS S GI+ +R+ +A  IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A      V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E   A++ F  KEGL L+ADEVYQ+NVY
Sbjct:  111 ILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVSGEGRARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIEAVIRFAFKEGLFLMADEVYQDNVY 280          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT1_MOUSE (Alanine aminotransferase 1 OS=Mus musculus GN=Gpt PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 7.058e-38
Identity = 86/171 (50.29%), Postives = 112/171 (65.50%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            IL    G + GAYS S GI+ +R+ +A  IE RDG  PADPN+IFL+ GAS A+  M++LL+  E     G+L PIPQYPLYSA++A      V YYLDE   W L+ +E+++ L  A+ +    R L VINPGNPTGQV   E   A++ F  +EGL L+ADEVYQ+NVY
Sbjct:  111 ILQACGGHSLGAYSISSGIQPIREDVAQYIERRDGGIPADPNNIFLSTGASDAIVTMLKLLVAGEGRARTGVLIPIPQYPLYSAALAELDAVQVDYYLDEERAWALDIAELRRALCQARDR-CCPRVLCVINPGNPTGQVQTRECIEAVIRFAFEEGLFLMADEVYQDNVY 280          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT1_HUMAN (Alanine aminotransferase 1 OS=Homo sapiens GN=GPT PE=1 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 2.682e-37
Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEND---GILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            IL    G + GAYS S GI+ +R+ +A  IE RDG  PADPN++FL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A  G   V YYLDE   W L+ +E+ + L  A+      RAL VINPGNPTGQV   E   A++ F  +E L LLADEVYQ+NVY
Sbjct:  111 ILQACGGHSLGAYSVSSGIQLIREDVARYIERRDGGIPADPNNVFLSTGASDAIVTVLKLLVAGEGHTRTGVLIPIPQYPLYSATLAELGAVQVDYYLDEERAWALDVAELHRALGQARDH-CRPRALCVINPGNPTGQVQTRECIEAVIRFAFEERLFLLADEVYQDNVY 280          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAT1_BOVIN (Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.803e-37
Identity = 84/171 (49.12%), Postives = 110/171 (64.33%), Query Frame = 3
Query:    3 ILDQIPGRATGAYSHSQGIKGLRDTIAAGIEARDG-FPADPNDIFLTDGASPAVHMMMQLLIRSEN---DGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            IL    G + GAYS S G++ +R+ +A  IE RDG  PADPN+IFL+ GAS A+  +++LL+  E     G+L PIPQYPLYSA++A      V YYLDE   W L+ +E+++ L  A+      RAL VINPGNPTGQV   E    ++ F  +E L LLADEVYQ+NVY
Sbjct:  111 ILQACGGHSLGAYSISAGVQMIREDVARYIERRDGGIPADPNNIFLSTGASDAIVTVLKLLVTGEGRTRTGVLIPIPQYPLYSAALAEFNAVQVDYYLDEERAWALDVAELRRALRQARDH-CRPRALCVINPGNPTGQVQTRECIEDVIRFAYEEKLFLLADEVYQDNVY 280          
BLAST of CX288865 vs. ExPASy Swiss-Prot
Match: ALAM_YEAST (Probable alanine aminotransferase, mitochondrial OS=Saccharomyces cerevisiae GN=ALT1 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.803e-37
Identity = 78/162 (48.15%), Postives = 106/162 (65.43%), Query Frame = 3
Query:   21 GRATGAYSHSQGIKGLRDTIAAGIEARD-GFPADPNDIFLTDGASPAVHMMMQLLIRSENDGILCPIPQYPLYSASIALHGGTLVPYYLDEATGWGLETSEVKKQLEAAKAKGITVRALVVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVY 503
            G + GAYS SQG++G+R ++A  I  RD G  + P DIFLT GAS AV+ ++ +  R    G+L PIPQYPLY+A++AL+    +PYYLDE +GW     E++  ++ A    I    LVVINPGNPTG VL+ E+   I E   K G V++ADEVYQEN++
Sbjct:  215 GGSVGAYSSSQGVEGIRKSVAEFITKRDEGEISYPEDIFLTAGASAAVNYLLSIFCRGPETGVLIPIPQYPLYTATLALNNSQALPYYLDENSGWSTNPEEIETVVKEAIQNEIKPTVLVVINPGNPTGAVLSPESIAQIFEVAAKYGTVVIADEVYQENIF 376          
The following BLAST results are available for this feature:
BLAST of CX288865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ALA2_PANMI4.090e-7884.52Alanine aminotransferase 2 OS=Panicum miliaceum PE... [more]
ALA2_HORVU5.906e-7783.33Alanine aminotransferase 2 OS=Hordeum vulgare PE=2... [more]
ALAM_DICDI2.676e-4557.23Probable alanine aminotransferase, mitochondrial O... [more]
ALAT_SCHPO4.421e-4050.32Putative alanine aminotransferase OS=Schizosacchar... [more]
ALAT_YEAST4.888e-3948.77Probable alanine aminotransferase OS=Saccharomyces... [more]
ALAT1_RAT2.426e-3850.88Alanine aminotransferase 1 OS=Rattus norvegicus GN... [more]
ALAT1_MOUSE7.058e-3850.29Alanine aminotransferase 1 OS=Mus musculus GN=Gpt ... [more]
ALAT1_HUMAN2.682e-3750.29Alanine aminotransferase 1 OS=Homo sapiens GN=GPT ... [more]
ALAT1_BOVIN7.803e-3749.12Alanine aminotransferase 1 OS=Bos taurus GN=GPT PE... [more]
ALAM_YEAST7.803e-3748.15Probable alanine aminotransferase, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC02006C09SK IF1 Citrus clementina cDNA clone C02006C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288865 ID=CX288865; Name=CX288865; organism=Citrus clementina; type=EST; length=506bp
AGATACTGGATCAAATTCCTGGGCGAGCAACTGGGGCTTACAGTCATAGT
CAGGGTATCAAGGGACTGCGTGATACAATCGCTGCTGGAATTGAGGCTCG
TGATGGTTTTCCTGCTGATCCAAATGATATTTTCTTGACAGATGGTGCAA
GTCCTGCTGTCCACATGATGATGCAGTTATTGATAAGATCAGAGAACGAT
GGAATTCTCTGTCCGATTCCTCAGTACCCTTTATACTCTGCTTCAATTGC
TCTCCATGGTGGGACCTTGGTGCCTTACTACCTAGATGAAGCAACAGGAT
GGGGATTGGAAACTTCGGAGGTTAAGAAGCAATTGGAGGCCGCCAAGGCC
AAAGGTATTACCGTTAGGGCCTTGGTTGTAATAAATCCAGGCAATCCAAC
TGGACAGGTTCTTGCTGAAGAAAACCAGCGTGCAATTGTGGAGTTCTGCA
AAAAGGAGGGTCTTGTTCTTCTTGCAGATGAGGTATACCAGGAAAATGTT
TATGTG
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