CX288869

Overview
NameCX288869
Unique NameCX288869
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6925 contig Ccv1_Contig6925:50..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_ARATH (Brix domain-containing protein 1 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.702e-34
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1
Query:  310 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            M++++TPK  + KR LE RAPKLVETGKKTLIL GTKTS TL+ V+TELY LKKG AIRY+R+NENIRPFESGGETSLEFFS KTDCSIF+
Sbjct:    1 MMEIRTPKTGKAKRVLESRAPKLVETGKKTLILHGTKTSATLSSVMTELYRLKKGGAIRYSRRNENIRPFESGGETSLEFFSQKTDCSIFV 91          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_ORYSJ (Brix domain-containing protein 1 homolog OS=Oryza sativa subsp. japonica GN=Os01g0513800 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.182e-29
Identity = 59/88 (67.05%), Postives = 74/88 (84.09%), Query Frame = 1
Query:  319 VKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            ++ P++ R KR L K APKLVETGKKTLIL GTKTS  LN VL +L+ LK+ +A++Y++KN+NIRPFESGGETSLEFFSLKTDCS+ +
Sbjct:    5 IRVPRSQRAKRELLKHAPKLVETGKKTLILHGTKTSAVLNSVLADLFHLKRDNAVKYSKKNDNIRPFESGGETSLEFFSLKTDCSLIV 92          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_MOUSE (Brix domain-containing protein 1 OS=Mus musculus GN=Bxdc1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.783e-15
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  316 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            KV  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F+
Sbjct:    6 KVLKPKTKRAKRFLEKREPKLTENIKNAMLIKGGNANATVTQVLRDMYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFM 91          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_BOVIN (Brix domain-containing protein 1 OS=Bos taurus GN=BXDC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 43/89 (48.31%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  316 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            +V  PK  R KR LEKR PKL E  K  ++++G   ++T+  VL ++Y LKK   I Y +KN   RPFE   +TSLEFFS K+DCS+F+
Sbjct:    6 RVVKPKTKRAKRFLEKREPKLSENIKNAMLIKGGNANSTVTQVLRDVYALKKPYGILYKKKNIT-RPFED--QTSLEFFSKKSDCSLFM 91          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_SCHPO (Brix domain-containing protein 1 homolog OS=Schizosaccharomyces pombe GN=SPAC926.08c PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.337e-14
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  310 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            ML+   PKN R KRALEKR PKLVE  K  + L+G  TS    DVL +++ LKK  ++ + +KN NI PFE    +SLEFFS K D ++ +
Sbjct:    1 MLRQVKPKNARTKRALEKREPKLVEGAKTAIFLRGNATSQISLDVLGDIHALKKPFSVNFQKKN-NILPFEDA--SSLEFFSEKNDAALAV 88          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: BXDC1_HUMAN (Brix domain-containing protein 1 OS=Homo sapiens GN=BXDC1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 42/89 (47.19%), Postives = 57/89 (64.04%), Query Frame = 1
Query:  316 KVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            +V  PK  R KR LEKR PKL E  K  ++++G   + T+  VL ++Y LKK   + Y +KN   RPFE   +TSLEFFS K+DCS+F+
Sbjct:    6 RVVKPKTKRAKRFLEKREPKLNENIKNAMLIKGGNANATVTKVLKDVYALKKPYGVLYKKKNIT-RPFED--QTSLEFFSKKSDCSLFM 91          
BLAST of CX288869 vs. ExPASy Swiss-Prot
Match: RPF2_YEAST (Ribosome biogenesis protein RPF2 OS=Saccharomyces cerevisiae GN=RPF2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.690e-13
Identity = 41/91 (45.05%), Postives = 55/91 (60.44%), Query Frame = 1
Query:  310 MLKVKTPKNPRVKRALEKRAPKLVETGKKTLILQGTKTSNTLNDVLTELYLLKKGSAIRYTRKNENIRPFESGGETSLEFFSLKTDCSIFI 582
            M++   PKN R KRAL KR  KLVE  K+ L + G   +  L+D++ +L  LKK    R+ RKN+ I PFE    + LEFFS K DCS+ +
Sbjct:    1 MIRTVKPKNARAKRALVKREAKLVENVKQALFIPGQSCNKNLHDIMVDLSALKKPDMKRFNRKND-IHPFED--MSPLEFFSEKNDCSLMV 88          
The following BLAST results are available for this feature:
BLAST of CX288869 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
BXDC1_ARATH1.702e-3476.92Brix domain-containing protein 1 homolog OS=Arabid... [more]
BXDC1_ORYSJ8.182e-2967.05Brix domain-containing protein 1 homolog OS=Oryza ... [more]
BXDC1_MOUSE8.783e-1548.31Brix domain-containing protein 1 OS=Mus musculus G... [more]
BXDC1_BOVIN1.498e-1448.31Brix domain-containing protein 1 OS=Bos taurus GN=... [more]
BXDC1_SCHPO3.337e-1448.35Brix domain-containing protein 1 homolog OS=Schizo... [more]
BXDC1_HUMAN7.435e-1447.19Brix domain-containing protein 1 OS=Homo sapiens G... [more]
RPF2_YEAST3.690e-1345.05Ribosome biogenesis protein RPF2 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionC02006D02SK IF1 Citrus clementina cDNA clone C02006D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288869 ID=CX288869; Name=CX288869; organism=Citrus clementina; type=EST; length=583bp
GTTCGCGCCTCACACCTCCACCACTCACAAGCGGTTGAAATCGAAAACCA
CCCTAAATCCCTAACCCTTGAACGCCGTCCAGCTTGCAGTCGCTCTCATC
GAACGCCGAATGCCTCGCCTGAGCTGAGCACGCGTTGTTGCCGTCGAAGG
TTGAACGCCGGCTGCCCTGCCTCGCCTCGCTCAGCGCACTTCACCGTCAT
CAAACGTCGGCAACCCGCTGCATCTTGGCTCGCGTGAAACACACCGCACT
TGGCCGCCTTGTCCATTCTTTCCACTGTTGGTCGCTGTTAACACAAAAGG
TTAAGAAATATGTTGAAAGTGAAAACTCCCAAGAATCCCAGAGTCAAGCG
TGCGCTTGAAAAACGTGCTCCAAAACTTGTTGAGACAGGGAAGAAGACGC
TTATTCTTCAAGGAACAAAGACGAGCAACACGTTGAATGATGTATTAACA
GAACTTTATCTTCTGAAGAAAGGAAGTGCAATAAGATATACCCGAAAGAA
TGAAAACATTAGACCTTTTGAAAGTGGTGGTGAAACTTCTTTGGAGTTCT
TTTCACTAAAAACGGATTGCAGCATTTTTATTT
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