CX288875

Overview
NameCX288875
Unique NameCX288875
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length537
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13222 contig Ccv1_Contig13222:680..1216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM2_RAT (Metal transporter CNNM2 OS=Rattus norvegicus GN=Cnnm2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  426 DLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM2_MOUSE (Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  426 DLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM2_HUMAN (Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.531e-17
Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  II GALEL  KT +D MTP+   F             + IM  G++R+PV+ G  +NI+ L+ VK+L  VD  D  PL+   K     +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  426 DLVKEELNIIQGALELRTKTVEDVMTPLRDCFMITGEAILDFNTMSEIMESGYTRIPVFEGERSNIVDLLFVKDLAFVDPDDCTPLKTITKFYNHPLHFVFNDTKLDAMLEEFKKGKSHLAIVQR-VNNEGEGDPF 560          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: MAM3_YEAST (Protein MAM3 OS=Saccharomyces cerevisiae GN=MAM3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.483e-15
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 2
Query:   29 LTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGN-PTNIIGLILVKNLLSVDYRDAVPLRKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKD 394
            LT DE TII+  L+L  K  ++ MTPI   F+              I   G SR+P++  N P N IG++LV+ L+S D  D +P+    +  +P  S +    +ILN FQ+G +H+ VV K+
Sbjct:  236 LTKDEVTIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNFIGMLLVRVLISYDPDDCLPISHFPLATLPETSPNTSCLNILNYFQEGKAHMCVVSKE 358          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM4_XENTR (Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.530e-15
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 2
Query:   29 LTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            +  +E  II GALEL  KT +D MT +   F             ++IM  G++R+PVY    +NI+ ++ VK+L  VD  D  PL    +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  351 IVREEMNIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRIPVYENERSNIVDILYVKDLAFVDPDDCTPLSTITRFYSHPLHFVFSDTKLDAVLEEFKKGKSHLAIVQK-VNSEGEGDPF 484          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM4_HUMAN (Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 5.637e-15
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  353 DLVKEELNMIQGALELRTKTVEDIMTQLQDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 487          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM4_RAT (Metal transporter CNNM4 OS=Rattus norvegicus GN=Cnnm4 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  351 DLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 485          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM4_MOUSE (Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.362e-15
Identity = 48/136 (35.29%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPTNIIGLILVKNLLSVDYRDAVPLR---KMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  +I GALEL  KT +D MT +   F             + IM  G++R+PV+    +NI+ ++ VK+L  VD  D  PL+   +     +  V  D  L  +L EF+KG SH+A+V K +N + EG+ F
Sbjct:  350 DLVKEELNMIQGALELRTKTVEDIMTQLHDCFMIRSDAILDFNTMSEIMESGYTRIPVFEDEQSNIVDILYVKDLAFVDPDDCTPLKTITRFYNHPVHFVFHDTKLDAMLEEFKKGKSHLAIVQK-VNNEGEGDPF 484          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM1_MOUSE (Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 PE=1 SV=4)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPT-NIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  II GALEL  K  ++ +TP+   F             + I+  G++R+PVY G+   NI+ ++ VK+L  VD  D  PL    +   R +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  338 DLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQR-VNNEGEGDPF 473          
BLAST of CX288875 vs. ExPASy Swiss-Prot
Match: CNNM1_HUMAN (Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.640e-14
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 2
Query:   26 DLTHDETTIIAGALELTEKTAKDAMTPISKAFSXXXXXXXXXXXXNAIMTMGHSRVPVYSGNPT-NIIGLILVKNLLSVDYRDAVPL---RKMIIRRIPRVSEDMPLYDILNEFQKGHSHIAVVYKDLNEKKEGELF 424
            DL  +E  II GALEL  K  ++ +TP+   F             + I+  G++R+PVY G+   NI+ ++ VK+L  VD  D  PL    +   R +  V  D  L  +L EF+KG SH+A+V + +N + EG+ F
Sbjct:  338 DLVKEELNIIQGALELRTKVVEEVLTPLGDCFMLRSDAVLDFATVSEILRSGYTRIPVYEGDQRHNIVDILFVKDLAFVDPDDCTPLLTVTRFYNRPLHCVFNDTRLDTVLEEFKKGKSHLAIVQR-VNNEGEGDPF 473          
The following BLAST results are available for this feature:
BLAST of CX288875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CNNM2_RAT3.531e-1738.24Metal transporter CNNM2 OS=Rattus norvegicus GN=Cn... [more]
CNNM2_MOUSE3.531e-1738.24Metal transporter CNNM2 OS=Mus musculus GN=Cnnm2 P... [more]
CNNM2_HUMAN3.531e-1738.24Metal transporter CNNM2 OS=Homo sapiens GN=CNNM2 P... [more]
MAM3_YEAST1.483e-1535.77Protein MAM3 OS=Saccharomyces cerevisiae GN=MAM3 P... [more]
CNNM4_XENTR2.530e-1535.56Metal transporter CNNM4 OS=Xenopus tropicalis GN=c... [more]
CNNM4_HUMAN5.637e-1535.29Metal transporter CNNM4 OS=Homo sapiens GN=CNNM4 P... [more]
CNNM4_RAT7.362e-1535.29Metal transporter CNNM4 OS=Rattus norvegicus GN=Cn... [more]
CNNM4_MOUSE7.362e-1535.29Metal transporter CNNM4 OS=Mus musculus GN=Cnnm4 P... [more]
CNNM1_MOUSE1.640e-1435.04Metal transporter CNNM1 OS=Mus musculus GN=Cnnm1 P... [more]
CNNM1_HUMAN1.640e-1435.04Metal transporter CNNM1 OS=Homo sapiens GN=CNNM1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02006D08SK IF1 Citrus clementina cDNA clone C02006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288875 ID=CX288875; Name=CX288875; organism=Citrus clementina; type=EST; length=537bp
TGGCAATGAGGCTGGGAAAGGTGGGGATCTAACTCATGATGAGACTACTA
TCATCGCTGGAGCTCTGGAGTTGACTGAAAAAACTGCAAAAGATGCCATG
ACTCCCATATCGAAGGCATTTTCTCTTGATCTGGATGCAACACTTACTTT
GGATACCTTAAATGCCATAATGACCATGGGTCATAGTAGAGTTCCTGTTT
ACTCTGGGAATCCGACAAATATAATTGGCCTCATTCTGGTTAAAAATCTT
TTATCAGTCGATTATAGAGATGCAGTTCCTTTGCGGAAAATGATCATACG
GAGAATACCACGGGTTTCAGAAGACATGCCTTTGTATGATATTCTAAATG
AATTTCAGAAAGGACATAGCCACATTGCTGTTGTATATAAGGATCTAAAT
GAGAAAAAAGAGGGTGAGCTTTTTAAGGACAATTGTAAGAAGCCAAGAGG
ACAACCTGAGAAATCATCTGAAAAAGTTGATAATGGGGTTACTGCTGCTG
GCCAGAATTTGCGGAATAAATTGGAATCAAAAGATGC
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