CX288881 | Citrus Genome Database

Overview


Name	CX288881
Unique Name	CX288881
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	541

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig11015	contig	Ccv1_Contig11015:523..1063.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU31_ARATH (3-isopropylmalate dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=IMDH1 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 4.127e-90
Identity = 160/180 (88.89%), Postives = 175/180 (97.22%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+M+VRELTGGIYFG+PRG  + E+GEE+GFNTE+YAA+E+DRIARVAFETARKR GKLCSVDKANVL+AS+ WRKR+TA+ASEYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK
Sbjct:  169 VDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 348

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU32_ARATH (3-isopropylmalate dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=IMDH2 PE=2 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 1.568e-89
Identity = 162/180 (90.00%), Postives = 173/180 (96.11%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VDLMVVRELTGGIYFG+PRG    E+GEE+GFNTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVLEAS+ WRKR+TA+ASEYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASL +SGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK
Sbjct:  168 VDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLEASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 347

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU33_ARATH (3-isopropylmalate dehydrogenase 3, chloroplastic OS=Arabidopsis thaliana GN=IMDH3 PE=1 SV=1)

HSP 1 Score: 325.865 bits (834), Expect = 7.782e-89
Identity = 159/180 (88.33%), Postives = 174/180 (96.67%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+M+VRELTGGIYFG+PRG  + E+GEE+G +TE+YAA+E+DRIARVAFETARKR GKLCSVDKANVL+AS+ WRKR+TA+ASEYPDVELSHMYVDNAAMQLIR+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK
Sbjct:  172 VDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 351

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_BRANA (3-isopropylmalate dehydrogenase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 8.604e-88
Identity = 158/180 (87.78%), Postives = 172/180 (95.56%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VDLMVVRELTGGIYFG PRG    E+GEE+G+NTEVYAA+E+DRIARVAFETARKR GKLCSVDKANVL+AS+ WR+R+TA+A+EYPDVELSHMYVDNAAMQL+R+PKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASL +SGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK
Sbjct:  169 VDLMVVRELTGGIYFGVPRGIKTNENGEEVGYNTEVYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRRRVTALAAEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLSDSGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 348

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_THEEB (3-isopropylmalate dehydrogenase OS=Thermosynechococcus elongatus (strain BP-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.626e-78
Identity = 142/180 (78.89%), Postives = 160/180 (88.89%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VDLMVVRELTGGIYFG+PRG   TE GE+ G NT  Y A E+DRI RVAFETARKR GKLCSVDKANVLE S  WR R+TA+++EYPDVEL+H+YVDNAAMQL+R PKQFDTIVT+N+FGDILSD A+M+TGSIGMLPSASLGESGP LFEP+HGSAPDIAGQDKANPLA +LSAAM+L+
Sbjct:  130 VDLMVVRELTGGIYFGQPRGIFTTETGEQRGVNTMAYTATEIDRIGRVAFETARKRQGKLCSVDKANVLEVSQLWRDRLTALSAEYPDVELTHLYVDNAAMQLVRAPKQFDTIVTSNLFGDILSDIAAMLTGSIGMLPSASLGESGPALFEPVHGSAPDIAGQDKANPLAMVLSAAMMLR 309

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_ANASP (3-isopropylmalate dehydrogenase OS=Anabaena sp. (strain PCC 7120) GN=leuB PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.377e-77
Identity = 140/180 (77.78%), Postives = 157/180 (87.22%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+MVVRELTGGIYFGKPRG   TE GE+ G NT VY   E+DRI R+AFETARKR GKLCSVDKANVL+ S  WR RIT ++ EYPDVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+
Sbjct:  130 VDIMVVRELTGGIYFGKPRGIFTTETGEKRGVNTMVYTESEIDRIGRIAFETARKRRGKLCSVDKANVLDVSQLWRDRITNLSQEYPDVELSHLYVDNAAMQLVRAPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLR 309

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_ANAVT (3-isopropylmalate dehydrogenase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=leuB PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 6.834e-77
Identity = 139/180 (77.22%), Postives = 156/180 (86.67%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+MVVRELTGGIYFGKPRG   TE GE+ G NT VY   E+DRI R+AFETARKR GKLCSVDKANVL+ S  WR RIT ++ EYPDVELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAG DKANPLA +LSAAM+L+
Sbjct:  130 VDIMVVRELTGGIYFGKPRGIFTTETGEKRGVNTMVYTESEIDRIGRIAFETARKRRGKLCSVDKANVLDVSQLWRDRITKLSQEYPDVELSHLYVDNAAMQLVRAPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGLDKANPLAQVLSAAMMLR 309

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_SYNY3 (3-isopropylmalate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=leuB PE=3 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 5.785e-76
Identity = 137/180 (76.11%), Postives = 157/180 (87.22%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+MVVRELTGGIYFGKP+G   TE GE+ G NT  Y   E+DRIA+VAFETARKR G+LCSVDKANVL+ S  WR R+ AIA +YPDVELSH+YVDNAAMQL+R+P+QFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG  GPGLFEP+HGSAPDIAGQDKANPLA +LSAAM+L+
Sbjct:  130 VDIMVVRELTGGIYFGKPKGIFETETGEKRGVNTMAYTVGEIDRIAKVAFETARKRRGQLCSVDKANVLDVSQLWRDRVMAIAVDYPDVELSHLYVDNAAMQLVRSPRQFDTIVTGNLFGDILSDIAAMLTGSIGMLPSASLGSDGPGLFEPVHGSAPDIAGQDKANPLAQVLSAAMMLR 309

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_SYNJA (3-isopropylmalate dehydrogenase OS=Synechococcus sp. (strain JA-3-3Ab) GN=leuB PE=3 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 7.072e-74
Identity = 134/180 (74.44%), Postives = 154/180 (85.56%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            +DL+VVRELTGGIYFG+P+G      G   G NT  Y+  EVDRIARVAFE ARKR  KLCSVDKANVLE S  WR+R+TAIA+EYPDVELSH+YVDNAAMQL+R PKQFD I+T N+FGDILSDEA+M+TGSIGMLPSASLG SGPG++EP+HGSAPDIAGQDKANP+A +LS AMLL+
Sbjct:  136 IDLVVVRELTGGIYFGQPKGIFTDAKGSRRGVNTMAYSEAEVDRIARVAFELARKRRRKLCSVDKANVLEVSQLWRERVTAIAAEYPDVELSHLYVDNAAMQLVRWPKQFDVILTENLFGDILSDEAAMLTGSIGMLPSASLGSSGPGVYEPVHGSAPDIAGQDKANPIAQVLSGAMLLR 315

[Close]

BLAST of CX288881 vs. ExPASy Swiss-Prot
Match: LEU3_SPIPL (3-isopropylmalate dehydrogenase OS=Spirulina platensis GN=leuB PE=3 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 9.236e-74
Identity = 133/180 (73.89%), Postives = 155/180 (86.11%), Query Frame = 1

Query:    1 VDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKRHGKLCSVDKANVLEASMFWRKRITAIASEYPDVELSHMYVDNAAMQLIRNPKQFDTIVTNNIFGDILSDEASMITGSIGMLPSASLGESGPGLFEPIHGSAPDIAGQDKANPLATILSAAMLLK 540
            VD+MVVRELTGGIYFG+P+G   TE G+  G NT  Y   E+DRI RV FETA+KR G+LCSVDKANVL+ S  WR RI A+A++YP+VELSH+YVDNAAMQL+R PKQFDTIVT N+FGDILSD A+M+TGSIGMLPSASLG SGPG+FEP+HGSAPDIAGQDKANPLA +LSAAM+L+
Sbjct:  130 VDIMVVRELTGGIYFGQPKGIFETETGKNEGSNTMAYGESEIDRIGRVGFETAKKRQGRLCSVDKANVLDVSQLWRDRIMALAADYPEVELSHLYVDNAAMQLVRWPKQFDTIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQVLSAAMMLR 309

The following BLAST results are available for this feature:

BLAST of CX288881 vs. ExPASy Swiss-Prot

BLAST of CX288881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370


Match Name	E-value	Identity	Description
LEU31_ARATH	4.127e-90	88.89	3-isopropylmalate dehydrogenase 1, chloroplastic O...	[more]
LEU32_ARATH	1.568e-89	90.00	3-isopropylmalate dehydrogenase 2, chloroplastic O...	[more]
LEU33_ARATH	7.782e-89	88.33	3-isopropylmalate dehydrogenase 3, chloroplastic O...	[more]
LEU3_BRANA	8.604e-88	87.78	3-isopropylmalate dehydrogenase, chloroplastic OS=...	[more]
LEU3_THEEB	1.626e-78	78.89	3-isopropylmalate dehydrogenase OS=Thermosynechoco...	[more]
LEU3_ANASP	1.377e-77	77.78	3-isopropylmalate dehydrogenase OS=Anabaena sp. (s...	[more]
LEU3_ANAVT	6.834e-77	77.22	3-isopropylmalate dehydrogenase OS=Anabaena variab...	[more]
LEU3_SYNY3	5.785e-76	76.11	3-isopropylmalate dehydrogenase OS=Synechocystis s...	[more]
LEU3_SYNJA	7.072e-74	74.44	3-isopropylmalate dehydrogenase OS=Synechococcus s...	[more]
LEU3_SPIPL	9.236e-74	73.89	3-isopropylmalate dehydrogenase OS=Spirulina plate...	[more]

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Properties


Property Name	Value
Genbank description	C02006E02SK IF1 Citrus clementina cDNA clone C02006E02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288881 ID=CX288881; Name=CX288881; organism=Citrus clementina; type=EST; length=541bp
GTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTGGAAA
GCCCAGGGGTTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTCAATA
CAGAGGTTTATGCTGCCTATGAGGTGGATCGTATTGCTCGTGTTGCTTTT
GAGACTGCTCGGAAACGTCATGGAAAACTTTGCTCTGTTGATAAAGCAAA
TGTCTTAGAGGCATCAATGTTTTGGAGAAAAAGAATCACAGCAATAGCCT
CAGAGTATCCTGATGTTGAACTCTCACATATGTATGTCGACAACGCTGCA
ATGCAACTTATTCGCAATCCAAAACAGTTTGATACAATTGTGACAAACAA
CATATTTGGTGACATTTTATCTGATGAGGCTTCAATGATTACTGGAAGTA
TAGGAATGCTCCCATCTGCCAGTCTTGGTGAATCGGGACCTGGACTCTTT
GAACCAATACATGGTTCTGCTCCCGATATTGCTGGACAGGATAAAGCAAA
CCCATTGGCTACTATACTCAGTGCTGCCATGCTTTTGAAGT