CX288896

Overview
NameCX288896
Unique NameCX288896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length488
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig259 contig Ccv1_Contig259:184..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: ARA4_ARATH (Ras-related protein ARA-4 OS=Arabidopsis thaliana GN=ARA-4 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 8.200e-78
Identity = 143/162 (88.27%), Postives = 155/162 (95.68%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            IIGDSAVGKSNLL+RYARNEFNP+SKATIGVEFQTQSM IDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITR +TF+++ RWLDEL THSDTTVA+ML+GNKCDLESIR VS EEGKSLAE+EGLFFMETSALDSTNVK AFE+VIREIYSN+S
Sbjct:   17 IIGDSAVGKSNLLTRYARNEFNPNSKATIGVEFQTQSMLIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRSSTFENVGRWLDELNTHSDTTVAKMLIGNKCDLESIRAVSVEEGKSLAESEGLFFMETSALDSTNVKTAFEMVIREIYSNIS 178          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 4.500e-76
Identity = 141/162 (87.04%), Postives = 154/162 (95.06%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDSAVGKSNLLSRYARNEF+ +SKATIGVEFQTQSMEI+GKEVKAQIWDTAGQERFRAVTSAYYRGAVGAL+VYDITRRTTF+S+ RWLDELK HSDTTVARMLVGNKCDLE+IR VS EEGK+LAE EGLFF+ETSALDSTNVK AFE+VI +IY+NVS
Sbjct:   17 VIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVS 178          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RGP1_ORYSJ (Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1 PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 1.113e-58
Identity = 110/162 (67.90%), Postives = 135/162 (83.33%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDSAVGKS LL+R+ARNEFN  SKATIGVEFQT+++ ID + VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R +FD ++RWL+EL+ H+D  +  ML+GNK DL ++R V TE+ K  AE E LFFMETSAL+STNV+NAF  V+ EIY  VS
Sbjct:   23 LIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHIDARTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTLRVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYRIVS 184          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 1.454e-58
Identity = 108/162 (66.67%), Postives = 133/162 (82.10%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDS VGKSNLLSR+ RNEFN  SK+TIGVEF T+S+ IDGK +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR TTF++  RWL EL+ H+D  +  ML+GNK DL  +  VSTE+GK+ AE E L+FMETSAL++TNV+NAF  V+ +IY  VS
Sbjct:   18 LIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVS 179          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 5.526e-58
Identity = 107/162 (66.05%), Postives = 134/162 (82.72%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDS VGKSNLLSR+ RNEF+  SK+TIGVEF T+S+++DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR +TF+++ RWL EL+ H+D  +  MLVGNK DL  +  V T+EGK+ AE E L+FMETSAL+STNV+NAF  V+ +IY  VS
Sbjct:   19 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVS 180          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 5.526e-58
Identity = 107/162 (66.05%), Postives = 137/162 (84.57%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDSAVGKS +L+R+ARNEF+  SK+TIGVEFQT+++ ID K VKAQIWDTAGQER+RAVTSAYYRGAVGA++VYDIT+R TFD I RWL+EL+ H+D  +  +L+GNKCDL + R+V TE+ K  AE EGLFF+ETSAL++TNV++AF  V+ EIY+ V+
Sbjct:   22 LIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVN 183          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.100e-57
Identity = 108/161 (67.08%), Postives = 130/161 (80.75%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNV 485
            +IGDS VGKSNLLSR++RNEFN  SK+TIGVEF T+S+ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYDITR  TF+++ RWL EL+ H+D  +  MLVGNK DL  +R VSTE+ K+ AE E  FFMETSAL+S NV+NAF  V+ EIY  V
Sbjct:   19 LIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVV 179          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 6.110e-57
Identity = 105/158 (66.46%), Postives = 131/158 (82.91%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIY 476
            +IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++++DGK VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR TF+++ RWL ELK H+D  +  MLVGNK DL  +  V TE+GKS AE E L FMETSAL++TNV++AF  V+ +IY
Sbjct:   18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIY 175          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.979e-57
Identity = 104/162 (64.20%), Postives = 132/162 (81.48%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+S+ ID K +KAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TR  T+++++RWL EL+ H+D  +  ML+GNK DL  +  VST+E K LAE EGL+FMETSAL++TNV+NAF   + +IY  VS
Sbjct:   18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVS 179          
BLAST of CX288896 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 7.979e-57
Identity = 105/162 (64.81%), Postives = 132/162 (81.48%), Query Frame = 3
Query:    3 IIGDSAVGKSNLLSRYARNEFNPHSKATIGVEFQTQSMEIDGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALIVYDITRRTTFDSISRWLDELKTHSDTTVARMLVGNKCDLESIRNVSTEEGKSLAEAEGLFFMETSALDSTNVKNAFEIVIREIYSNVS 488
            +IGDS VGKSNLLSR+ +NEFN  SK+TIGVEF T+++ +D K VKAQIWDTAGQER+RA+TSAYYRGAVGAL+VYD+TRR TF++ +RWL EL+ H+D  +  ML+GNK DL  +  V TE+GKS AE E L+FMETSAL++TNV+NAF  V+ +IY  VS
Sbjct:   18 LIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVS 179          
The following BLAST results are available for this feature:
BLAST of CX288896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ARA4_ARATH8.200e-7888.27Ras-related protein ARA-4 OS=Arabidopsis thaliana ... [more]
ARA1_ARATH4.500e-7687.04Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RGP1_ORYSJ1.113e-5867.90Ras-related protein RGP1 OS=Oryza sativa subsp. ja... [more]
RB11E_LOTJA1.454e-5866.67Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RIC2_ORYSJ5.526e-5866.05Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RB11A_LOTJA5.526e-5866.05Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11B_TOBAC2.100e-5767.08Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAA1B_ARATH6.110e-5766.46Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT3_NICPL7.979e-5764.20Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
RB11D_LOTJA7.979e-5764.81Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC02006F06SK IF1 Citrus clementina cDNA clone C02006F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288896 ID=CX288896; Name=CX288896; organism=Citrus clementina; type=EST; length=488bp
TGATAATCGGCGACTCGGCGGTGGGGAAATCGAACCTACTGTCTCGTTAC
GCTCGGAACGAGTTCAATCCTCACTCGAAGGCGACAATTGGAGTCGAGTT
TCAAACGCAGAGCATGGAGATCGACGGCAAGGAAGTCAAGGCTCAGATTT
GGGACACCGCCGGCCAGGAGCGCTTCCGCGCCGTCACTTCTGCTTACTAC
AGAGGCGCCGTCGGTGCTCTCATTGTTTACGACATTACCAGGCGTACCAC
TTTTGACAGCATCTCTCGCTGGCTCGATGAGCTCAAGACTCATTCTGATA
CCACTGTGGCAAGGATGCTGGTCGGGAACAAATGTGATTTGGAGAGTATC
CGGAATGTGAGCACTGAAGAAGGCAAAAGCCTTGCAGAAGCAGAAGGGTT
GTTTTTCATGGAAACTTCTGCATTGGACTCGACGAATGTTAAAAATGCTT
TTGAGATTGTCATCCGAGAGATTTACAGCAATGTCAGC
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