CX288907

Overview
NameCX288907
Unique NameCX288907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length513
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65
Identity = 120/171 (70.18%), Postives = 133/171 (77.78%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GLMTLSTF NDLEPTS+WLEV+FSI +VLSGL+LFTLLIGNIQVFLHAVMAKKRKMQ+RCRDMEWWM               +ERQRW  +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF           CDR +P V+SKDEKIIREGDPV RM+FI+RGR+K
Sbjct:  407 GLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVK 577          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 8.560e-47
Identity = 90/171 (52.63%), Postives = 121/171 (70.76%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GLMTLSTFGN LE T+ W EV+F+I ++ SGL+L T+LIGNI+VFLHA  +KK+ M L+ R++EWWM              +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF           CDRV+ L+++K E I +EGD V RM+F+VRG ++
Sbjct:  373 GLMTLSTFGN-LESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQ 542          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510
            GL  LS  G +L+ +    E++F+I I +SGL+LF LLIGN+Q +L +   ++ +M++R RD E WM               YE+ RW    G +E  L+++LP+ LRR IKR+LCLDL+KKVPLF           CDR+RP++Y+++  +IREGDPV  M+F++RGR+
Sbjct:  349 GLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRL 518          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34
Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GL  LST G  LE +++  EV+FSI + ++GL+LF LLIGN+Q +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P +Y++   ++REGDPV  M+FI+RGR++
Sbjct:  389 GLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLE 559          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34
Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GL  LST G  L+ +++  EV+FSI I ++GL+LF LLIGN+Q +L ++  +  +M+++ RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P +Y++   I+REGDPV  M+FI+RGR++
Sbjct:  384 GLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLE 554          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34
Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GL  LST G  LE +++  EV+FSI + ++GL+LF LLIGN+Q +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C+R++P ++++   ++REGDPV  M+FI+RGR++
Sbjct:  390 GLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE 560          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34
Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GL  LST G  LE +++ +E++FSI + +SGL+LF LLIGN+Q +L ++  +  +M+++ RD E WM               Y++ +W    G DE  L+++LP+ LRR IKR+LCL L+++VPLF           C R++P ++++   ++REGDPV  M+FI+RGR++
Sbjct:  374 GLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLE 544          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513
            GL  LST G  L+ ++   EV+FSI I ++GL+LF LLIGN+Q +L ++  +  +M+++ RD E WM               Y++ +W    G DE  +++ LP+ LRR IKR+LCL+L+++VPLF           C+R++P ++++   I+REGDPV  M+FI+RGR++
Sbjct:  378 GLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLE 548          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33
Identity = 67/170 (39.41%), Postives = 105/170 (61.76%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510
            GL  LS  G +L  +    E++F++ I +SGL+LF LLIGN+Q +L +   ++ +M++R RD E WM               YE+ +W    G +E  L+++LP+ LRR IKR+ CLDL+KKVPLF           CD+++P++Y+++   IREGDPV  M+F++RG++
Sbjct:  350 GLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKL 519          
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.567e-32
Identity = 64/170 (37.65%), Postives = 106/170 (62.35%), Query Frame = 1
Query:    1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510
            GL  LS+ G +L+ +++  E+ F++ I ++GL+LF+ LIGN+Q +L +   +  +M+++ RD E WM               YE+ +W    G DE  L+ +LP+ LRR IKR+LCL L+ +VP+F           CDR++P++Y+++  I+REGDPV  M+FI+RG++
Sbjct:  362 GLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKL 531          
The following BLAST results are available for this feature:
BLAST of CX288907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNGC2_ARATH4.086e-6570.18Cyclic nucleotide-gated ion channel 2 OS=Arabidops... [more]
CNGC4_ARATH8.560e-4752.63Cyclic nucleotide-gated ion channel 4 OS=Arabidops... [more]
CNG10_ARATH3.985e-3642.94Probable cyclic nucleotide-gated ion channel 10 OS... [more]
CNGC9_ARATH1.674e-3439.77Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC8_ARATH2.187e-3439.77Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC6_ARATH8.310e-3439.18Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC5_ARATH8.310e-3439.18Probable cyclic nucleotide-gated ion channel 5 OS=... [more]
CNGC7_ARATH1.085e-3339.18Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG13_ARATH1.085e-3339.41Putative cyclic nucleotide-gated ion channel 13 OS... [more]
CNGC1_ARATH1.567e-3237.65Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC02006G06SK IF1 Citrus clementina cDNA clone C02006G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288907 ID=CX288907; Name=CX288907; organism=Citrus clementina; type=EST; length=513bp
GGCCTCATGACTCTCAGCACTTTTGGCAATGATCTTGAGCCTACAAGTCA
CTGGCTTGAAGTAATGTTCAGCATATGCATTGTACTCAGTGGACTAATGC
TCTTCACTCTGTTGATTGGTAACATTCAGGTGTTTTTGCATGCTGTAATG
GCAAAGAAGCGAAAGATGCAGCTGAGGTGCCGGGACATGGAATGGTGGAT
GAGGCGGAGGCAGCTGCCGTCGCGTTTGAGACAGAGAGTTCGCCATTATG
AGCGTCAAAGATGGGCAACAATGGGAGGAGAAGATGAGATGGAACTGATC
AAAGACTTGCCGGAAGGGCTGAGGCGTGGCATTAAACGCTATCTCTGCCT
TGATCTCATAAAAAAGGTACCTTTGTTCCACAACCTGGATGATCTCATTC
TTGACAACATATGTGACAGAGTTAGGCCCCTTGTATACTCTAAAGATGAA
AAGATAATCAGAGAAGGGGATCCTGTGCCAAGAATGGTGTTCATTGTTCG
TGGACGGATTAAA
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