CX288907
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 246.899 bits (629), Expect = 4.086e-65 Identity = 120/171 (70.18%), Postives = 133/171 (77.78%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GLMTLSTF NDLEPTS+WLEV+FSI +VLSGL+LFTLLIGNIQVFLHAVMAKKRKMQ+RCRDMEWWM +ERQRW +GGEDE+ELI DLP GLRR IKRYLC DLI KVPLF CDR +P V+SKDEKIIREGDPV RM+FI+RGR+K Sbjct: 407 GLMTLSTFANDLEPTSNWLEVIFSIVMVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQIRCRDMEWWMKRRQLPSRLRQRVRRFERQRWNALGGEDELELIHDLPPGLRRDIKRYLCFDLINKVPLFRGMDDLILDNICDRAKPRVFSKDEKIIREGDPVQRMIFIMRGRVK 577
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 8.560e-47 Identity = 90/171 (52.63%), Postives = 121/171 (70.76%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GLMTLSTFGN LE T+ W EV+F+I ++ SGL+L T+LIGNI+VFLHA +KK+ M L+ R++EWWM +YERQRWA M G DE E++++LPEGLRR IK +LCLDL+++VPLF CDRV+ L+++K E I +EGD V RM+F+VRG ++ Sbjct: 373 GLMTLSTFGN-LESTTEWSEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMHLKMRNIEWWMKKRHLPIGFRQRVRNYERQRWAAMRGVDECEMVQNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIQKEGDAVQRMLFVVRGHLQ 542
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36 Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510 GL LS G +L+ + E++F+I I +SGL+LF LLIGN+Q +L + ++ +M++R RD E WM YE+ RW G +E L+++LP+ LRR IKR+LCLDL+KKVPLF CDR+RP++Y+++ +IREGDPV M+F++RGR+ Sbjct: 349 GLRNLSALGQNLQTSKFVGEIIFAISICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPEDLRKRIRRYEQYRWQETRGVEEETLLRNLPKDLRRDIKRHLCLDLLKKVPLFEIMDEQLLDAVCDRLRPVLYTENSYVIREGDPVGEMLFVMRGRL 518
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.674e-34 Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GL LST G LE +++ EV+FSI + ++GL+LF LLIGN+Q +L ++ + +M+++ RD E WM Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C+R++P +Y++ ++REGDPV M+FI+RGR++ Sbjct: 389 GLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLYTESSYLVREGDPVNEMLFIIRGRLE 559
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2) HSP 1 Score: 144.821 bits (364), Expect = 2.187e-34 Identity = 68/171 (39.77%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GL LST G L+ +++ EV+FSI I ++GL+LF LLIGN+Q +L ++ + +M+++ RD E WM Y++ +W G DE +++ LP+ LRR IKR+LCL+L+++VPLF C+R++P +Y++ I+REGDPV M+FI+RGR++ Sbjct: 384 GLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLE 554
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34 Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GL LST G LE +++ EV+FSI + ++GL+LF LLIGN+Q +L ++ + +M+++ RD E WM Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C+R++P ++++ ++REGDPV M+FI+RGR++ Sbjct: 390 GLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETRGVDEENLVQNLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE 560
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC5_ARATH (Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 8.310e-34 Identity = 67/171 (39.18%), Postives = 108/171 (63.16%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GL LST G LE +++ +E++FSI + +SGL+LF LLIGN+Q +L ++ + +M+++ RD E WM Y++ +W G DE L+++LP+ LRR IKR+LCL L+++VPLF C R++P ++++ ++REGDPV M+FI+RGR++ Sbjct: 374 GLQNLSTLGQGLETSTYPMEIIFSISLAISGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPQDLRERVRRYDQYKWLETRGVDEEYLVQNLPKDLRRDIKRHLCLALVRRVPLFKSMDDKLLDAICMRLKPCLFTESTYLVREGDPVDEMLFIIRGRLE 544
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33 Identity = 67/171 (39.18%), Postives = 107/171 (62.57%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRIK 513 GL LST G L+ ++ EV+FSI I ++GL+LF LLIGN+Q +L ++ + +M+++ RD E WM Y++ +W G DE +++ LP+ LRR IKR+LCL+L+++VPLF C+R++P ++++ I+REGDPV M+FI+RGR++ Sbjct: 378 GLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQNLRERVRRYDQYKWLETRGVDEENIVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLFTESTYIVREGDPVNEMMFIIRGRLE 548
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNG13_ARATH (Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=2 SV=2) HSP 1 Score: 142.51 bits (358), Expect = 1.085e-33 Identity = 67/170 (39.41%), Postives = 105/170 (61.76%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510 GL LS G +L + E++F++ I +SGL+LF LLIGN+Q +L + ++ +M++R RD E WM YE+ +W G +E L+++LP+ LRR IKR+ CLDL+KKVPLF CD+++P++Y+++ IREGDPV M+F++RG++ Sbjct: 350 GLRNLSALGQNLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHRMLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMDEQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKL 519
BLAST of CX288907 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.567e-32 Identity = 64/170 (37.65%), Postives = 106/170 (62.35%), Query Frame = 1 Query: 1 GLMTLSTFGNDLEPTSHWLEVMFSICIVLSGLMLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMXXXXXXXXXXXXXXHYERQRWATMGGEDEMELIKDLPEGLRRGIKRYLCLDLIKKVPLFHXXXXXXXXXXCDRVRPLVYSKDEKIIREGDPVPRMVFIVRGRI 510 GL LS+ G +L+ +++ E+ F++ I ++GL+LF+ LIGN+Q +L + + +M+++ RD E WM YE+ +W G DE L+ +LP+ LRR IKR+LCL L+ +VP+F CDR++P++Y+++ I+REGDPV M+FI+RG++ Sbjct: 362 GLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQYKWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLYTEESYIVREGDPVDEMLFIMRGKL 531 The following BLAST results are available for this feature:
BLAST of CX288907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288907 ID=CX288907; Name=CX288907; organism=Citrus clementina; type=EST; length=513bpback to top |