CX288913

Overview
NameCX288913
Unique NameCX288913
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length271
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8277 contig Ccv1_Contig8277:675..945. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.250e-23
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR+WDY R R +ADK GA LLCDMAHISG+VA ++A +PF +C +VTTTTHK+LRGPRAG+IF+R
Sbjct:  212 YPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPRAGLIFFR 277          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.250e-23
Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            YPR+WDY R RA+ADK GA L+CDMAH SGLVAAQ   +PF+YC +VT+TTHK+LRGPR+G+IF+R
Sbjct:  188 YPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFR 253          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.365e-20
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ DYAR R +AD+ GA L+ DMAHISGLVAA    +PFE+CH+VTTTTHK+LRG RAGMIFYR
Sbjct:  205 YSRNLDYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYR 270          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.783e-20
Identity = 48/66 (72.73%), Postives = 51/66 (77.27%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DYARFR +AD CGA LL DMAHISGLVAA    +PFE+  IVTTTTHKSLRGPR  MIFYR
Sbjct:  207 YSRKLDYARFRKIADGCGAYLLSDMAHISGLVAANVIDSPFEHSDIVTTTTHKSLRGPRGAMIFYR 272          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.328e-20
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ DYAR R +AD  GA L+ DMAHISGLVAA    +PFE+CH+VTTTTHK+LRG RAGMIFYR
Sbjct:  199 YSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYR 264          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.971e-20
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ +YAR R +AD+ GA L+ DMAHISGLVAA    +PFE+CH+VTTTTHK+LRG RAGMIFYR
Sbjct:  205 YSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYR 270          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.187e-20
Identity = 47/66 (71.21%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DY RFR +AD CGA LL DMAH+SGLVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR
Sbjct:  220 YARVLDYKRFREIADACGAYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYR 285          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.774e-20
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R+ DYAR R +AD  GA L+ DMAHISGLVAA    +PFE+CH+V+TTTHK+LRG RAGMIFYR
Sbjct:  205 YSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYR 270          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.847e-20
Identity = 46/66 (69.70%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYR 198
            Y R  DY RF+ +AD CGA L+ DMAHISGLVAA    +PFEY  IVTTTTHKSLRGPR  MIFYR
Sbjct:  221 YSRVLDYKRFKEIADACGAYLMSDMAHISGLVAAGVTRSPFEYSDIVTTTTHKSLRGPRGAMIFYR 286          
BLAST of CX288913 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.847e-20
Identity = 49/90 (54.44%), Postives = 57/90 (63.33%), Query Frame = 1
Query:    1 YPRDWDYARFRAVADKCGALLLCDMAHISGLVAAQEAANPFEYCHIVTTTTHKSLRGPRAGMIFYRXXXXXXXXXXXEGAVKDFEDNNNF 270
            Y R  DY R R +ADKCGA L+ DMAHISGL+AA    +PFEY  IVTTTTHKSLRGPR  MIF+R           +  + D E+  NF
Sbjct:  196 YCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSINPKTGKEVLYDLENPINF 285          
The following BLAST results are available for this feature:
BLAST of CX288913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI2.250e-2369.70Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI2.250e-2369.70Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYC_PONAB1.365e-2069.70Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYM_CANGA1.783e-2072.73Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_MOUSE2.328e-2069.70Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_HUMAN3.971e-2068.18Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_ASHGO5.187e-2071.21Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SHEEP6.774e-2068.18Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYM_KLULA8.847e-2069.70Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_YEAST8.847e-2054.44Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]

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Properties
Property NameValue
Genbank descriptionC02006H02SK IF1 Citrus clementina cDNA clone C02006H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288913 ID=CX288913; Name=CX288913; organism=Citrus clementina; type=EST; length=271bp
TATCCGAGGGACTGGGATTATGCTAGATTCAGAGCTGTTGCTGATAAGTG
TGGTGCCCTTTTGCTCTGTGATATGGCTCATATCAGTGGCCTTGTTGCTG
CTCAGGAAGCTGCAAACCCCTTTGAGTACTGTCACATAGTCACAACCACT
ACTCACAAGAGCTTGCGGGGTCCTAGGGCTGGTATGATCTTCTACCGGAA
GGGTCCTAAACCACCCAAGAAGGGCCAACCAGAGGGTGCGGTAAAAGACT
TTGAAGACAATAACAACTTTG
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