CX288920

Overview
NameCX288920
Unique NameCX288920
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length585
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig160 contig Ccv1_Contig160:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.082e-16
Identity = 45/114 (39.47%), Postives = 58/114 (50.88%), Query Frame = 2
Query:  242 NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            ++ IS       FE     RN     A GF+ Y++FITAT  +    FGTTG    + KEI AFLA    +T+ G+  A  GP +WG CYN E      YC  S +  +PC PG
Sbjct:    2 SQNISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFA--AFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQ--WPCAPG 111          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.770e-15
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 2
Query:  275 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            QF++    RN     A GF+ Y +FITA   +   GFGTTG    + KE+ AF      +T+ G+  A  GP +WG C+  E +P+  YC+ S   T+PC  G
Sbjct:   94 QFDDMLKHRNDAACPARGFYTYNAFITAAKSFP--GFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPS--ATWPCASG 192          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.147e-14
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  275 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            QF++    RN     A GF+ Y +FI A   +   GFGTTG    + KEI AF      +T+ G+  A  GP +WG C+  E +PS +YC  S +  +PC  G
Sbjct:   79 QFDDMLKHRNDNACPARGFYTYDAFINAAKSFP--GFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAE--WPCASG 177          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.957e-14
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN P   A GF+ Y +F+ A   +    FGTTG+   + +E+ AFL     +T+ G+  A  GP AWG C+  E +PS +YC  S +  YPC PG
Sbjct:   11 FDQMLKHRNNPACPAKGFYTYDAFLAAAKSFP--SFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPR--YPCAPG 108          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.555e-14
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            + + F  ++     A GF+ Y SF+ A  ++    F  TG    + +E+ AFLA +  +T+ G+  A  GP AWGLCY  E++P  SYCD + K  +PC PG
Sbjct:   58 YASLFLHKDDAACPARGFYTYASFVRAATRFPR--FAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDK-QWPCYPG 156          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.693e-14
Identity = 39/112 (34.82%), Postives = 56/112 (50.00%), Query Frame = 2
Query:  248 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            ++S      QF+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   S  YC  S +  +PC PG
Sbjct:   24 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPG 131          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC  +    YPC PG
Sbjct:   61 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC--ASDPNYPCAPG 159          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.435e-14
Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYG-VATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F      RN     A GF+ Y +FI A   +    F TTG +  + +EI AFLA    +T+ G G  A  GP AWG CYN E++P  SYC  +    YPC PG
Sbjct:   83 FNQMLLHRNDGACPARGFYTYDAFIAAARSFP--AFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYC--ASDPNYPCAPG 181          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 39/124 (31.45%), Postives = 55/124 (44.35%), Query Frame = 2
Query:  215 CPTWSKFCCNETISD----YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPC 574
            C     +CC   +S     +F    FE     RN       GF+ Y ++  AT  Y   GFG TG    + +E+ AF A    +TS    +    P  WG C  +E++P+  YCD   K +YPC
Sbjct:   47 CGLTVAYCCAGCVSQCRNCFFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYP--GFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPC 168          
BLAST of CX288920 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.294e-13
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 2
Query:  278 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPG 583
            F+     RN     A GF+ Y +F+ A   +   GFGTTG+   + +E+ AFLA    +T+ G+  A  G  AWG C+  E   + +YC  S +  +PC PG
Sbjct:   89 FDRMLLHRNDGACQAKGFYTYDAFVAAAGAFP--GFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQ--WPCAPG 186          
The following BLAST results are available for this feature:
BLAST of CX288920 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
CHID_SOLLC6.082e-1639.47Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_ARATH1.770e-1537.86Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI2_BRANA1.147e-1437.86Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_CARPA1.957e-1438.24Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI10_ORYSJ2.555e-1437.25Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_HORVU5.693e-1434.8226 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI2_GOSHI7.435e-1440.78Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI7.435e-1440.78Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI8_POPTR4.819e-1331.45Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SECCE6.294e-1335.29Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]

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Properties
Property NameValue
Genbank descriptionC02006H10SK IF1 Citrus clementina cDNA clone C02006H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288920 ID=CX288920; Name=CX288920; organism=Citrus clementina; type=EST; length=585bp
TCCCATTTCTCTCATCTTCCCCCAAGTGAATCTCGAAACAACAGGTAGAT
CTGGTGAGAACGAGAAAATGAAGATGAAGAATGGCAGTGTGGCAATAACA
CTGACAGTGGCACTAGTACTGGCACTGGCAGTGAGTTTGGCAAATGGAGA
TGAATCAGAGAAGGTGATAGTGAAGAAGGTGAAGGGGAAAAAAGTTTGCA
TAAAAGGGTGGGAGTGCCCAACATGGTCGAAATTCTGCTGTAACGAGACG
ATATCAGACTATTTCCAGGTTTACCAGTTTGAGAATTTCTTCTCGAAAAG
GAACACGCCGGTGGCACATGCCGTGGGATTCTGGGATTATCAGTCTTTCA
TTACTGCCACCGTCAAATATCAGCCCCTCGGCTTCGGTACCACCGGTACT
AAGCTTGATAAGATGAAGGAGATTTGCGCTTTTCTTGCCCACGTGGGCTG
CAAGACCTCTTGTGGATATGGAGTGGCCACTGGAGGACCATTGGCCTGGG
GACTTTGCTACAACCATGAAATGAGCCCCAGTCAGTCATATTGTGATGAT
TCCTACAAATACACATATCCCTGCACCCCTGGAGC
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