CX288924

Overview
NameCX288924
Unique NameCX288924
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1011 contig Ccv1_Contig1011:356..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_RAT (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Rattus norvegicus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62
Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KELK VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:  100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_PONAB (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Pongo abelii GN=IMP4 PE=2 SV=2)

HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62
Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KELK VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:  100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Mus musculus GN=Imp4 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62
Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KELK VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:  100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Homo sapiens GN=IMP4 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.153e-62
Identity = 115/193 (59.59%), Postives = 147/193 (76.17%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KELK VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GTM EA PHLI   F S+LG+R ++IL++LFPVPK D+ R+ITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT++KR FL
Sbjct:  100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTMSEAKPHLITHGFSSRLGKRVSDILRYLFPVPKDDSHRVITFANQDDYISFRHHVYKKT-DHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTARKRVFL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Bos taurus GN=IMP4 PE=2 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.672e-62
Identity = 114/193 (59.07%), Postives = 147/193 (76.17%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KELK VFP AQRMNRG   +  ++  C+A+  TD+++VHEHRG P GLI+ HLPFGPTAYF L NVV RHDI D   +GT  EA PHLI+  F S+LG+R ++IL++LFPVPK D++R+ITFANQ DYISFRHH+Y+K    +++EL E+GPRFEL+LY I+LGT++Q + A +EW   PY NT+ KR FL
Sbjct:  100 FAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVGLIVSHLPFGPTAYFTLCNVVMRHDIPD---LGTASEAKPHLIMHGFSSRLGKRVSDILRYLFPVPKDDSRRVITFANQDDYISFRHHVYKKT-NHRNVELTEVGPRFELKLYMIRLGTLEQEATADVEWRWHPYTNTAHKRVFL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: YHPK_CAEEL (Brix domain-containing protein ZK795.3 OS=Caenorhabditis elegans GN=ZK795.3 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.543e-60
Identity = 110/193 (56.99%), Postives = 144/193 (74.61%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPVPKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQ-SEAQIEWVIRPYMNTSKKRKFL 578
            F KE+K +FPNAQR+NRG   + ++++  +A + TD+++  E RG PDG+++CHLPFGPTA+F + NVV RHDI    + GTM E YPHLI DN  SKLG R   ILKHLFPVPK D+KRIITF+N  DYISFRHH+Y+ +   + +EL E GPRFEL+ YQIKLGT++  + A+ EWV+R Y NT++KR FL
Sbjct:   95 FAKEMKLIFPNAQRINRGHYDVKQVVQASKAQDSTDLIIFTETRGNPDGMLVCHLPFGPTAFFSMANVVMRHDI---PNCGTMSEQYPHLIFDNLNSKLGHRFTTILKHLFPVPKPDSKRIITFSNSEDYISFRHHVYKTENDGE-VELTEAGPRFELKPYQIKLGTLETLAAAEDEWVLRSYTNTARKRTFL 283          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_SCHPO (U3 small nucleolar ribonucleoprotein protein imp4 OS=Schizosaccharomyces pombe GN=imp4 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.761e-56
Identity = 102/183 (55.74%), Postives = 132/183 (72.13%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPY 548
            F KE++ + PN+ R+NRG  V+  ++E  RA++ TD+V++HEHRG+PDGL+I HLP+GPT  F L NVV RHDI    + GTM EAYPHLI +N  SKLG+R    L  LFP  PK  T R++TFAN  DYISFRHHIY K  GPK + L E GPRFE++L++I LGTVD  +A +EW ++PY
Sbjct:  101 FAKEVRLLIPNSYRLNRGNIVVGSLVEAARANDITDIVILHEHRGIPDGLVISHLPYGPTLSFSLHNVVLRHDI---PNTGTMSEAYPHLIFENLTSKLGKRVKTALSALFPPDPKDTTPRVVTFANTDDYISFRHHIYAKT-GPKQIILSEAGPRFEMKLFEITLGTVDMVDADVEWKLKPY 279          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_YARLI (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Yarrowia lipolytica GN=IMP4 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.233e-51
Identity = 93/193 (48.19%), Postives = 132/193 (68.39%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578
            F KE+K +FP + R+NRGG V+  ++  C+    +D++++HEHRGVP  + + H P GPTAYF L NVV RHD+ D    G M E +PHLI DNF + LG+R   ILKHLFP   K D+ R+ITFAN+ D+IS R H+Y K    + +EL E+GPRFE+RLY ++LGT++  +A +EW +  +M T+ K+ +L
Sbjct:   96 FAKEVKLLFPTSIRLNRGGTVLPSLVSACKTSASSDLIVLHEHRGVPTAMTVSHFPHGPTAYFSLHNVVLRHDLPD---TGNMSEVHPHLIFDNFTTDLGKRVVQILKHLFPPGVKKDSARVITFANRGDFISVRQHVYVKT--REGVELAEVGPRFEMRLYDLRLGTLENKDADVEWRMHGFMRTANKKDYL 283          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_CANGA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Candida glabrata GN=IMP4 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.917e-51
Identity = 91/193 (47.15%), Postives = 135/193 (69.95%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFL 578
            F KE+K +FPNA R+NRG  V+++++  C+    TD++++HEHRGVP  L + H P+GPTA+F L NVV RHDI +R   G   E  PHLI DNF + LG R   ILK+LFP  PK D+ R+ITFAN+ D+IS R H+Y +      +E+ E+GPRFE+RL++++LGT++  +A +EW +R ++ T+ ++ +L
Sbjct:  101 FAKEIKLLFPNAVRLNRGNYVMADLVSACKKSGTTDLIVLHEHRGVPTSLTVSHFPYGPTAFFSLHNVVLRHDILNR---GNQSEVNPHLIFDNFTTPLGNRVVTILKNLFPPGPKKDSSRVITFANRGDFISVRQHVYVRT--KDGVEMAEVGPRFEMRLFELRLGTLENKDADVEWQLRRFVRTANRKDYL 288          
BLAST of CX288924 vs. ExPASy Swiss-Prot
Match: IMP4_DEBHA (U3 small nucleolar ribonucleoprotein protein IMP4 OS=Debaryomyces hansenii GN=IMP4 PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.469e-50
Identity = 88/194 (45.36%), Postives = 136/194 (70.10%), Query Frame = 3
Query:    3 FVKELKFVFPNAQRMNRGGQVISEIIETCRAHEFTDVVLVHEHRGVPDGLIICHLPFGPTAYFGLLNVVTRHDIKDRKSIGTMPEAYPHLILDNFKSKLGERTANILKHLFPV-PKADTKRIITFANQSDYISFRHHIYEKQGGPKSLELKEIGPRFELRLYQIKLGTVDQSEAQIEWVIRPYMNTSKKRKFLG 581
            F KE+K +FPN+ ++NRG  VI++++ TC+  + +D++++HEHRG+P  L I H P GP+  F L NV  RHD+ +   IG   E+YPHL+ +NF S+LG+R   I+KHLFP   K D+ R+ITF N  D+IS RHH+Y K     ++EL E+GPRFE+RLY+++LG +D  ++++EW +R ++ T  ++ +LG
Sbjct:   96 FSKEIKLMFPNSIKLNRGNYVITDLVATCQRVQISDLIILHEHRGIPTSLTISHFPHGPSIIFTLHNVKLRHDLPE---IGNSSESYPHLVFENFTSELGKRVVKIMKHLFPPGVKKDSSRVITFINNDDFISVRHHMYVKT--KDTVELSEVGPRFEMRLYELRLGLLDNKDSEVEWQLRRFIRTGNRKNYLG 284          
The following BLAST results are available for this feature:
BLAST of CX288924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
IMP4_RAT2.153e-6259.59U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_PONAB2.153e-6259.59U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_MOUSE2.153e-6259.59U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_HUMAN2.153e-6259.59U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_BOVIN3.672e-6259.07U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
YHPK_CAEEL1.543e-6056.99Brix domain-containing protein ZK795.3 OS=Caenorha... [more]
IMP4_SCHPO8.761e-5655.74U3 small nucleolar ribonucleoprotein protein imp4 ... [more]
IMP4_YARLI2.233e-5148.19U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_CANGA2.917e-5147.15U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]
IMP4_DEBHA2.469e-5045.36U3 small nucleolar ribonucleoprotein protein IMP4 ... [more]

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Properties
Property NameValue
Genbank descriptionC02007A03SK IF1 Citrus clementina cDNA clone C02007A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288924 ID=CX288924; Name=CX288924; organism=Citrus clementina; type=EST; length=617bp
AGTTTGTAAAGGAGTTGAAGTTTGTCTTTCCTAATGCACAAAGAATGAAT
CGTGGAGGCCAGGTCATATCTGAAATTATTGAAACTTGTCGTGCACATGA
GTTTACAGATGTTGTGTTGGTTCATGAACATCGTGGTGTGCCAGACGGTT
TAATAATATGTCATTTACCTTTTGGCCCAACTGCCTACTTTGGATTACTC
AATGTGGTTACCAGACATGATATTAAGGACAGAAAATCCATTGGTACAAT
GCCTGAGGCTTACCCACATCTGATTCTCGACAACTTCAAATCCAAGCTAG
GTGAAAGGACAGCAAACATTCTAAAACATCTATTTCCAGTGCCAAAGGCT
GATACCAAACGTATCATCACTTTTGCAAATCAGTCTGACTATATTTCATT
CAGGCATCATATATATGAGAAACAAGGAGGCCCAAAGTCACTTGAGCTGA
AGGAAATTGGTCCTCGGTTTGAATTGCGGCTTTATCAGATAAAGTTAGGA
ACAGTTGATCAGAGTGAAGCCCAGATCGAATGGGTAATCAGGCCTTACAT
GAACACAAGCAAGAAGCGAAAATTCCTTGGGGATTGACAACCAATCAACC
ACTAAAATGATATTGAG
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