CX288962

Overview
NameCX288962
Unique NameCX288962
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CML11_ARATH (Calmodulin-like protein 11 OS=Arabidopsis thaliana GN=CML11 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.577e-55
Identity = 100/143 (69.93%), Postives = 126/143 (88.11%), Query Frame = 1
Query:   82 LPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMML 510
            L Q QI EF++AF L DKDGDGCIT DELA  IRSLDQNPT++EL+ MI E+D++GNGTIEF EFL+LMA +++ET A EE+KEAFKVFDK+++G+IS +ELRHVM+NLGEK+TDEE++QM K+ADLDGDGQ+NY+EF RMM+
Sbjct:   28 LTQEQIMEFKEAFCLFDKDGDGCITADELATVIRSLDQNPTEQELQDMITEIDSDGNGTIEFSEFLNLMANQLQETDADEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIKEADLDGDGQVNYDEFVRMMM 170          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CML8_ARATH (Calmodulin-like protein 8 OS=Arabidopsis thaliana GN=CML8 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.706e-53
Identity = 96/143 (67.13%), Postives = 126/143 (88.11%), Query Frame = 1
Query:   82 LPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMML 510
            L + QI EF++AF L DKDGDGCIT++ELA  IRSLDQNPT++EL  +I E+D++ NGTIEF EFL+LMAKK++E+ A+EE+KEAFKVFDK+++G+IS +EL HVM+NLGEK+TDEE+EQM K+ADLDGDGQ+NY+EF +MM+
Sbjct:    6 LTKDQITEFKEAFCLFDKDGDGCITVEELATVIRSLDQNPTEQELHDIITEIDSDSNGTIEFAEFLNLMAKKLQESDAEEELKEAFKVFDKDQNGYISASELSHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYDEFVKMMI 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM_WHEAT (Calmodulin OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 6.146e-53
Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMA+KM++T ++EE+KEAF+VFDK++DGFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQDGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.048e-52
Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMAKKM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.048e-52
Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMAKKM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.048e-52
Identity = 98/148 (66.22%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QI+EF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMAKKM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+E+M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDEQISEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM_SOLLC (Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 1.788e-52
Identity = 98/148 (66.22%), Postives = 125/148 (84.46%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M + L + QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI EVDA+ NGTI+F EFL+LMA+KM++T ++EE+KEAFKVFDK+++GFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQ+NYEEF RMMLA
Sbjct:    1 MAEQLTEEQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMISEVDADQNGTIDFPEFLNLMARKMKDTDSEEELKEAFKVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVRMMLA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.050e-52
Identity = 97/148 (65.54%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMA+KM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM3_ORYSJ (Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CAM3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.050e-52
Identity = 97/148 (65.54%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMA+KM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+E+M ++AD+DGDGQINY+EF ++M+A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYDEFVKVMMA 148          
BLAST of CX288962 vs. ExPASy Swiss-Prot
Match: CALM2_SOYBN (Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.050e-52
Identity = 97/148 (65.54%), Postives = 126/148 (85.14%), Query Frame = 1
Query:   70 MGDVLPQYQIAEFQKAFYLLDKDGDGCITIDELAAAIRSLDQNPTKEELRHMIDEVDANGNGTIEFEEFLDLMAKKMRETKAQEEMKEAFKVFDKNRDGFISPNELRHVMLNLGEKVTDEELEQMAKDADLDGDGQINYEEFSRMMLA 513
            M D L   QIAEF++AF L DKDGDGCIT  EL   +RSL QNPT+ EL+ MI+EVDA+GNGTI+F EFL+LMA+KM++T ++EE+KEAF+VFDK+++GFIS  ELRHVM NLGEK+TDEE+++M ++AD+DGDGQINYEEF ++M+A
Sbjct:    1 MADQLTDDQIAEFKEAFSLFDKDGDGCITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAFRVFDKDQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMMA 148          
The following BLAST results are available for this feature:
BLAST of CX288962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 448
Match NameE-valueIdentityDescription
CML11_ARATH8.577e-5569.93Calmodulin-like protein 11 OS=Arabidopsis thaliana... [more]
CML8_ARATH4.706e-5367.13Calmodulin-like protein 8 OS=Arabidopsis thaliana ... [more]
CALM_WHEAT6.146e-5366.22Calmodulin OS=Triticum aestivum PE=1 SV=3[more]
CALM2_ORYSJ1.048e-5266.22Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_ORYSI1.048e-5266.22Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2... [more]
CALM1_ARATH1.048e-5266.22Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=... [more]
CALM_SOLLC1.788e-5266.22Calmodulin OS=Solanum lycopersicum GN=CALM1 PE=2 S... [more]
CALM_HORVU3.050e-5265.54Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2[more]
CALM3_ORYSJ3.050e-5265.54Calmodulin-3 OS=Oryza sativa subsp. japonica GN=CA... [more]
CALM2_SOYBN3.050e-5265.54Calmodulin-2 OS=Glycine max GN=CAM-2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02007D09SK IF1 Citrus clementina cDNA clone C02007D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288962 ID=CX288962; Name=CX288962; organism=Citrus clementina; type=EST; length=579bp
AGGCTCTCTCTGTCTCTCTCTCTCTGTCTCTGCGTCTCTCTCATTTTTGA
GGGAAAATATTCCAACAATATGGGAGATGTCTTGCCCCAGTATCAGATTG
CTGAGTTTCAAAAAGCTTTTTATTTACTCGACAAGGATGGAGACGGCTGC
ATAACAATCGATGAGTTGGCCGCAGCAATAAGATCATTAGACCAGAATCC
TACCAAAGAAGAGCTCCGACACATGATTGATGAAGTTGATGCCAATGGAA
ATGGAACTATAGAATTTGAGGAGTTTTTGGATCTCATGGCGAAAAAAATG
AGGGAAACTAAAGCTCAAGAGGAAATGAAAGAAGCTTTCAAAGTATTCGA
TAAGAATCGAGACGGTTTCATATCTCCTAATGAGTTGAGACACGTAATGT
TGAATCTTGGAGAGAAAGTGACAGATGAAGAGCTGGAGCAGATGGCTAAA
GATGCTGATTTGGATGGTGATGGTCAAATCAACTATGAAGAATTTTCCAG
AATGATGTTGGCTGCTGTTTGATTATCATAATTAAACTGCGAGTCCCCAT
AATCAAGTTCTGTCATGCAATAACTATCT
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