CX289032

Overview
NameCX289032
Unique NameCX289032
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig803 contig Ccv1_Contig803:198..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289032 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 2.995e-36
Identity = 60/102 (58.82%), Postives = 89/102 (87.25%), Query Frame = 3
Query:    3 RLSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADVVGANYVYTSLKKWSQLYGNFFKPSRFLEERATK 308
            R +  MPGGKP+++++++I+EMI FPVVNE+CRV++E +V+RASDLD+AS+LGM FP +RGG+VFWAD +GA Y+++ L KW+++YG+FFKPS +LE+RA +
Sbjct:  606 RCAKTMPGGKPVTLSDQDILEMIFFPVVNEACRVMDENVVIRASDLDIASILGMGFPKFRGGLVFWADTIGAPYIHSKLSKWTEIYGDFFKPSSYLEDRAKR 707          
BLAST of CX289032 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.701e-31
Identity = 60/101 (59.41%), Postives = 79/101 (78.22%), Query Frame = 3
Query:    9 SNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADVVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 311
            S +    K   + EK+IVEMI FPVVNE+CRVL EGI V+A+DLD+A V+GM FPSYRGG++FWAD +G+NY+Y+ L++WS+ YG FFKP  +L ERA +G
Sbjct:  611 SGVSVDPKLTKLPEKDIVEMIFFPVVNEACRVLAEGIAVKAADLDIAGVMGMGFPSYRGGLMFWADSLGSNYIYSRLEEWSKQYGGFFKPCGYLAERAVQG 711          
BLAST of CX289032 vs. ExPASy Swiss-Prot
Match: MFPA_BRANA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 4.949e-31
Identity = 58/102 (56.86%), Postives = 76/102 (74.51%), Query Frame = 3
Query:    6 LSNIMPGGKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADVVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 311
            +S   P  K   ++EKEI+EM  FPVVNE+CRV  EGI V+A+DLD+A + GM FP YRGGI+FWAD +G+ Y+Y+ L++WS+ YG FFKP  FL ER +KG
Sbjct:  610 VSGAKPDPKLEKLSEKEIIEMTFFPVVNEACRVFAEGIAVKAADLDIAGIFGMGFPPYRGGIMFWADSIGSKYIYSKLEEWSKAYGEFFKPCAFLAERGSKG 711          
BLAST of CX289032 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.688e-11
Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   15 IMPG--GKPISVTEKEIVEMILFPVVNESCRVLEEGIVVRASDLDVASVLGMSFPSYRGGIVFWADVVGANYVYTSLKKWSQLYGNFFKPSRFLEERATKG 311
            + PG  G+PI++ E+ +V+M+     NE+ R LEEGI+    D D+ ++ G+ FP + GG   + D +GA ++  +LK++   +G+ F P   L E A  G
Sbjct:  606 LTPGADGEPIALAERCVVQML-----NEAVRCLEEGIIASPRDGDIGAIFGIGFPPFLGGPFRYMDSLGAKHLVETLKRYQDQFGDRFAPCDRLVEMAESG 701          
The following BLAST results are available for this feature:
BLAST of CX289032 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
MFP_ORYSJ2.995e-3658.82Peroxisomal fatty acid beta-oxidation multifunctio... [more]
MFPA_CUCSA1.701e-3159.41Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
MFPA_BRANA4.949e-3156.86Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADJ_SHELP5.688e-1134.65Fatty acid oxidation complex subunit alpha OS=Shew... [more]
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Properties
Property NameValue
Genbank descriptionC02008C08SK IF1 Citrus clementina cDNA clone C02008C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289032 ID=CX289032; Name=CX289032; organism=Citrus clementina; type=EST; length=397bp
GACGACTAAGCAATATTATGCCTGGGGGAAAGCCTATATCTGTCACTGAA
AAAGAAATTGTGGAGATGATACTCTTTCCAGTGGTGAATGAATCATGTCG
TGTTTTGGAAGAAGGAATAGTAGTTCGAGCCTCAGACCTTGACGTTGCAT
CAGTTCTTGGAATGAGTTTCCCATCTTACCGTGGTGGCATCGTCTTTTGG
GCCGACGTAGTTGGGGCAAACTATGTGTATACAAGTCTAAAGAAATGGTC
ACAACTGTATGGTAACTTTTTCAAACCATCTAGGTTCTTGGAAGAAAGAG
CAACAAAAGGCATTCCGTTGAGTGCACCGGTGTCATCTTCTTCAACATCA
AGGGCGCGCCTCTAGGCAATAATTATATATTATATATGCTTTGATTC
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