CX289039

Overview
NameCX289039
Unique NameCX289039
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length398
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX289039_ssr23 microsatellite CX289039_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14830 contig Ccv1_Contig14830:689..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB11G_ARATH (ABC transporter G family member 11 OS=Arabidopsis thaliana GN=ABCG11 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.299e-35
Identity = 76/132 (57.58%), Postives = 95/132 (71.97%), Query Frame = 2
Query:    2 DTMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            D M + +K+   E TI EMGLQD  +T IG W  +G+SGG+KRRVSI +E+L RP+LLFLDEPTSGLDSA++++V   +  L +       RT+I SIHQPSSEVF+LF  L LLS G+TVYFG AS A EF
Sbjct:  157 DKMLRSEKRALVERTIIEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALSR-----DGRTVIASIHQPSSEVFELFDRLYLLSGGKTVYFGQASDAYEF 283          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.267e-33
Identity = 71/130 (54.62%), Postives = 99/130 (76.15%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            M+K +  +  E TI E+GLQD  +  IG W A+G+SGG+++RVSI +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD     RT+I+S+HQPSSEVF LF +L LLSSG++VYFG A +A EF
Sbjct:  135 MSKEEVSDIVEGTIMELGLQDCSDRVIGNWHARGVSGGERKRVSIALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD----GRTVISSVHQPSSEVFALFDDLFLLSSGESVYFGEAKSAVEF 259          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.267e-33
Identity = 70/130 (53.85%), Postives = 99/130 (76.15%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +TK +  +  E TI E+GLQD  +  IG W ++G+SGG+++RVS+ +E+LTRP++LFLDEPTSGLDSA++++V+  +  +  RD   G RT+++SIHQPSSEVF LF +L LLSSG+TVYFG +  A EF
Sbjct:  134 LTKEEVNDIVEGTIIELGLQDCADRVIGNWHSRGVSGGERKRVSVALEILTRPQILFLDEPTSGLDSASAFFVIQALRNI-ARD---GGRTVVSSIHQPSSEVFALFDDLFLLSSGETVYFGESKFAVEF 259          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.098e-30
Identity = 63/130 (48.46%), Postives = 94/130 (72.31%), Query Frame = 2
Query:    8 MTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +T+ +  +  E TI +MGL++  +  IG W  +G+SGG+K+R+SI +E+LT+P LLFLDEPTSGLDSA++++V+  +     R+     +T+++SIHQPS EVF LF +L LLS G+TVYFG A +A +F
Sbjct:  120 LTREEISDIVEATITDMGLEECSDRTIGNWHLRGISGGEKKRLSIALEVLTKPSLLFLDEPTSGLDSASAFFVVQIL-----RNIASSGKTVVSSIHQPSGEVFALFDDLLLLSGGETVYFGEAESATKF 244          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB14G_ARATH (ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.641e-26
Identity = 59/131 (45.04%), Postives = 87/131 (66.41%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            ++T+ +K E  +  I E+GL    N+ IGG   +G+SGG+K+RVSI  EML  P LL LDEPTSGLDS  ++ +++ I +L       G RT++T+IHQPSS ++ +F  + LLS G  +Y+G AS+A E+
Sbjct:  169 SLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRL-----ASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEY 294          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG1_DICDI (ABC transporter G family member 1 OS=Dictyostelium discoideum GN=abcG1 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.389e-25
Identity = 60/128 (46.88%), Postives = 85/128 (66.41%), Query Frame = 2
Query:   20 QKKERAEMTIKEMGLQDAMNTRIGGWGAK--GLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            +K +R +  I EMGL    +T +G    K  G+SGG++RRV+I IE+LT P ++ LDEPTSGLD++ S+YVMS + KL +       RTII +IHQP S ++ +F NL LL  G T+Y+G A+ A E+
Sbjct:  232 EKLQRVQDIIDEMGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVMSALKKLAK-----SGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEY 354          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_PIG (ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 55/128 (42.97%), Postives = 87/128 (67.97%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            TMT  +K ER  M I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ ++ GPA  A
Sbjct:  151 TMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAREA 273          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_MOUSE (ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.176e-24
Identity = 56/131 (42.75%), Postives = 88/131 (67.18%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            TM   +K ER    IKE+GL+   ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ V+ GPA  A E+
Sbjct:  150 TMKNHEKNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: ABCG2_BOVIN (ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.620e-24
Identity = 54/128 (42.19%), Postives = 86/128 (67.19%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAA 388
            TMT  +K ER    I+E+GL    ++++G    +G+SGG+++R SI +E++T P +LFLDEPT+GLDS+ +  V+  + ++ ++      RTII SIHQP   +F+LF +L LL+SG+ ++ GPA  A
Sbjct:  150 TMTSYEKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQ-----GRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEA 272          
BLAST of CX289039 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.836e-24
Identity = 59/131 (45.04%), Postives = 83/131 (63.36%), Query Frame = 2
Query:    5 TMTKLQKKERAEMTIKEMGLQDAMNTRIGGWGAKGLSGGQKRRVSICIEMLTRPKLLFLDEPTSGLDSAASYYVMSRIAKLDQRDHGVGSRTIITSIHQPSSEVFQLFHNLCLLSSGQTVYFGPASAANEF 397
            T+T+ QKK+RA   I+E+GL+   +T IGG   +G+SGG+++RVSI  E++  P LL LDEPTSGLDS  +   +     L   D     +T+IT+IHQPSS +F  F  L LL  G  +YFG +S A ++
Sbjct:  268 TLTREQKKQRALDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTI-----LMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDY 393          
The following BLAST results are available for this feature:
BLAST of CX289039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
AB11G_ARATH3.299e-3557.58ABC transporter G family member 11 OS=Arabidopsis ... [more]
AB15G_ARATH5.267e-3354.62ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH5.267e-3353.85ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH1.098e-3048.46ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB14G_ARATH1.641e-2645.04ABC transporter G family member 14 OS=Arabidopsis ... [more]
ABCG1_DICDI1.389e-2546.88ABC transporter G family member 1 OS=Dictyostelium... [more]
ABCG2_PIG1.176e-2442.97ATP-binding cassette sub-family G member 2 OS=Sus ... [more]
ABCG2_MOUSE1.176e-2442.75ATP-binding cassette sub-family G member 2 OS=Mus ... [more]
ABCG2_BOVIN2.620e-2442.19ATP-binding cassette sub-family G member 2 OS=Bos ... [more]
AB22G_ARATH5.836e-2445.04ABC transporter G family member 22 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC02008D05SK IF1 Citrus clementina cDNA clone C02008D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289039 ID=CX289039; Name=CX289039; organism=Citrus clementina; type=EST; length=398bp
GGACACGATGACCAAATTACAGAAGAAAGAAAGAGCAGAAATGACAATAA
AAGAAATGGGGCTCCAAGATGCCATGAATACAAGAATTGGAGGCTGGGGA
GCTAAAGGCCTTAGTGGTGGTCAAAAGAGGAGAGTTAGCATTTGCATTGA
AATGTTGACTCGACCAAAGCTTCTATTTCTTGACGAGCCAACAAGCGGAC
TTGATAGTGCTGCTTCATACTATGTAATGAGCAGGATTGCTAAGCTTGAT
CAAAGAGATCATGGAGTGGGATCAAGAACAATAATAACATCAATCCATCA
ACCTAGCAGCGAAGTTTTTCAGCTTTTTCACAACCTTTGCCTTCTTTCTT
CCGGTCAAACTGTCTATTTTGGTCCAGCTTCTGCGGCAAATGAGTTTT
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