CX289050

Overview
NameCX289050
Unique NameCX289050
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: YTX2_XENLA (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis PE=4 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 56/190 (29.47%), Postives = 91/190 (47.89%), Query Frame = -2
Query:   27 GN*IEEAGEIANQFCEYFAALFSTSSPTKDQMEDALRGLKPKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTYIALIPKCAKPRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHS 596
            G  +E+   I ++   ++  LFS    + D  E+   GL P VS      +  P T +E+++AL  M   K+PG DGL   F+Q  W ++                         ++L+PK    R +  +RP+SL +  Y+I+AK ++ RLK++L  VI   QS  +P R I DN+ +  + LH  R +
Sbjct:  396 GTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGL-PVVSERRKERLETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLSCRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFARRT 584          
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: POL2_MOUSE (Retrovirus-related Pol polyprotein LINE-1 OS=Mus musculus GN=Pol PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.006e-16
Identity = 63/208 (30.29%), Postives = 99/208 (47.60%), Query Frame = -2
Query:    3 IEDAHGN*IEEAGEIANQFCEYFAALFSTSSPTKDQMEDAL-RGLKPKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTY---IALIPKCAK-PRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHSKGKKKGLV 611
            I +  G+   +  EI N    ++  L+ST     D+M+  L R   PK++ +   +++ P + +EI   +  +   K+PGPDG  A FYQ  +K     ++    H +   GT+   N  Y   I LIPK  K P K+  FRPISL N+  +I+ K +A R++  +  +I   Q  FIP      NI      +H I   K K   ++
Sbjct:  400 IRNEKGDITTDPEEIQNTIRSFYKRLYSTKLENLDEMDKFLDRYQVPKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQT-FKEDLIPILHKLFHKIEVEGTLP--NSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYINKLKDKNHMII 604          
BLAST of CX289050 vs. ExPASy Swiss-Prot
Match: LIN1_NYCCO (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.015e-12
Identity = 53/194 (27.32%), Postives = 87/194 (44.85%), Query Frame = -2
Query:   18 EAGEIANQFCEYFAALFSTSSPTKDQMEDALRGLK-PKVSPEMNAYMS*PYTEEEITEALAQMCPTKAPGPDGLPAAFYQKHWKSVKEGVISTCLHILNNSGTIAPLNHTY----IALIPKCAK-PRKVTEFRPISLYNVIYRIIAKTVAKRLKTILHNVIDASQSAFIPNRLITDNIIVGYECLHKIRHSKGK 581
            +  EI     EY+  L+S       +++  L     P++S +    ++ P +  EI   +  +   K+PGPDG  + FYQ    + KE ++   L++  N      L +T+    I LIPK  K P +   +RPISL N+  +I+ K +  R++  +  +I   Q  FIP      NI      +  I   K K
Sbjct:  402 DPSEIQKILNEYYKKLYSHKYENLKEIDQYLEACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQ----TFKEELVPILLNLFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQHIKKIIHHDQVGFIPGSQGWFNIRKSINVIQHINKLKNK 591          
The following BLAST results are available for this feature:
BLAST of CX289050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YTX2_XENLA9.775e-1829.47Transposon TX1 uncharacterized 149 kDa protein OS=... [more]
POL2_MOUSE7.006e-1630.29Retrovirus-related Pol polyprotein LINE-1 OS=Mus m... [more]
LIN1_NYCCO8.015e-1227.32LINE-1 reverse transcriptase homolog OS=Nycticebus... [more]
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Properties
Property NameValue
Genbank descriptionC02008E07SK IF1 Citrus clementina cDNA clone C02008E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289050 ID=CX289050; Name=CX289050; organism=Citrus clementina; type=EST; length=627bp
GCTACTAATCCCTTTTTTTTCCCTTTGCTATGTCTAATCTTATGAAGGCA
TTCATACCCAACTATGATATTGTCAGTTATCAATCTGTTGGGGATGAAAG
CACTCTGAGAAGCATCAATGACATTATGCAAAATAGTTTTCAATCTTTTA
GCCACTGTTTTGGCAATGATTCTATAGATTACATTGTAAAGGCTTATTGG
TCTGAATTCGGTCACTTTCCTAGGCTTGGCACACTTAGGGATTAGAGCTA
TATAGGTGTGGTTTAAAGGAGCAATTGTACCTGAGTTATTGAGGATGTGA
AGGCATGTAGATATGACTCCTTCCTTTACAGATTTCCAATGCTTCTGATA
AAAAGCAGCAGGTAACCCATCAGGTCCGGGAGCCTTAGTTGGACACATTT
GGGCCAGTGCTTCTGTAATCTCCTCCTCTGTGTATGGCTAGCTCATGTAT
GCGTTCATTTCTGGTGACACTTTTGGCTTCAATCCTCTCAGGGCATCTTC
CATCTGATCTTTGGTGGGGCTGGAAGTTGAGAATAAAGCTGCAAAATACT
CACAAAATTGATTAGCAATTTCTCCAGCCTCTTCGATCTAATTACCGTGA
GCATCTTCTATTCCCCATATTTTATTT
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