CX289069

Overview
NameCX289069
Unique NameCX289069
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11659 contig Ccv1_Contig11659:636..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 271.166 bits (692), Expect = 2.242e-72
Identity = 132/180 (73.33%), Postives = 156/180 (86.67%), Query Frame = 2
Query:    2 FPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKIN-RGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVKTT 538
            FPEVFIN GI+LGYVSN  FS LPL +GWR+MLGIGA+PSV+ A+G LAMPESPRWLVMQGRL DAK+VLDKTSDS  E+ LRL DIK AAGIP DC+DDVVQV + N  GEGVW+ELL+RPTPAVR +++AA+GIHFFQQASGID+VVL+SPRIF+ AG+ +  ++LLATVAVG VKT+
Sbjct:  166 FPEVFINAGIMLGYVSNLAFSNLPLKVGWRLMLGIGAVPSVILAIGVLAMPESPRWLVMQGRLGDAKRVLDKTSDSPTEATLRLEDIKHAAGIPADCHDDVVQVSRRNSHGEGVWRELLIRPTPAVRRVMIAAIGIHFFQQASGIDAVVLFSPRIFKTAGLKTDHQQLLATVAVGVVKTS 345          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 9.421e-71
Identity = 131/179 (73.18%), Postives = 154/179 (86.03%), Query Frame = 2
Query:    2 FPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVKT 535
            FPE+FIN GILLGYVSNY FSKLP HLGWR MLG+GA+PSV  A+G LAMPESPRWLV+QGRL DA KVLDKTS++KEE++ RL DIK A GIP+D  DDV+ VP K + G+GVWK+LLVRPTP+VRHI++A +GIHF QQASGID+VVLYSP IF KAG+ SK+++LLATVAVG VKT
Sbjct:  156 FPEIFINIGILLGYVSNYFFSKLPEHLGWRFMLGVGAVPSVFLAIGVLAMPESPRWLVLQGRLGDAFKVLDKTSNTKEEAISRLDDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFAQQASGIDAVVLYSPTIFSKAGLKSKNDQLLATVAVGVVKT 334          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 2.741e-70
Identity = 130/179 (72.63%), Postives = 154/179 (86.03%), Query Frame = 2
Query:    2 FPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVKT 535
            FPE+FIN GILLGYVSNY F+KLP H+GWR MLGIGA+PSV  A+G LAMPESPRWLVMQGRL DA KVLDKTS++KEE++ RL DIK A GIP+D  DDV+ VP K + G+GVWK+LLVRPTP+VRHI++A +GIHF QQASGID+VVLYSP IF +AG+ SK+++LLATVAVG VKT
Sbjct:  156 FPEIFINIGILLGYVSNYFFAKLPEHIGWRFMLGIGAVPSVFLAIGVLAMPESPRWLVMQGRLGDAFKVLDKTSNTKEEAISRLNDIKRAVGIPDDMTDDVIVVPNKKSAGKGVWKDLLVRPTPSVRHILIACLGIHFSQQASGIDAVVLYSPTIFSRAGLKSKNDQLLATVAVGVVKT 334          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 7.482e-60
Identity = 110/179 (61.45%), Postives = 142/179 (79.33%), Query Frame = 2
Query:    5 PEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVP-KINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVKTT 538
            P + I+ GILLGY+ NY FSKLP+H+GWR+MLGI A+PS++ A G L MPESPRWL+MQGRL + K++L+  S+S EE+ LR  DIK AAGI   C DDVV++  K   GEGVWKEL++RPTPAVR +++ A+GIHFFQ ASGI++V+LY PRIF+KAGIT+KD+  L T+ VG +KTT
Sbjct:  148 PHLCISIGILLGYIVNYFFSKLPMHIGWRLMLGIAAVPSLVLAFGILKMPESPRWLIMQGRLKEGKEILELVSNSPEEAELRFQDIKAAAGIDPKCVDDVVKMEGKKTHGEGVWKELILRPTPAVRRVLLTALGIHFFQHASGIEAVLLYGPRIFKKAGITTKDKLFLVTIGVGIMKTT 326          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.349e-51
Identity = 103/177 (58.19%), Postives = 132/177 (74.58%), Query Frame = 2
Query:    5 PEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIP-EDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVK 532
            PE+ I+ GILLGYVSNY F KL L LGWR+MLGI A PS++ A G   MPESPRWLVMQGRL +AKK++   S+++EE+  R  DI  AA +   +  +    V K N G+ VW+EL+++P PAVR I++AAVGIHFF+ A+GI++VVLYSPRIF+KAG+ SKD+ LLATV VG  K
Sbjct:  153 PELCISLGILLGYVSNYCFGKLTLKLGWRLMLGIAAFPSLILAFGITRMPESPRWLVMQGRLEEAKKIMVLVSNTEEEAEERFRDILTAAEVDVTEIKEVGGGVKKKNHGKSVWRELVIKPRPAVRLILIAAVGIHFFEHATGIEAVVLYSPRIFKKAGVVSKDKLLLATVGVGLTK 329          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.585e-40
Identity = 87/178 (48.88%), Postives = 115/178 (64.61%), Query Frame = 2
Query:    2 FPEVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFVKT 535
            FPE+FIN GILLGYVSNY FS L +H+ WR+ML +G +PSV        +PESPRWLVM+GR+  A++VL KT++  +E+  RLA+I+ AA   E   D             VW+ELL  P+P VR +++   GI  FQQ +GID+ V YSP I ++AGI  + + L ATVAVG  KT
Sbjct:  185 FPEIFINLGILLGYVSNYAFSGLSVHISWRIMLAVGILPSVFIGFALCVIPESPRWLVMKGRVDSAREVLMKTNERDDEAEERLAEIQLAAAHTEGSED-----------RPVWRELL-SPSPVVRKMLIVGFGIQCFQQITGIDATVYYSPEILKEAGIQDETKLLAATVAVGVTKT 350          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: YWTG_BACSU (Putative metabolite transport protein ywtG OS=Bacillus subtilis GN=ywtG PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.846e-21
Identity = 63/174 (36.21%), Postives = 90/174 (51.72%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFV 529
            ++ I  GILL Y+ NY F+       WR MLG+ A+PS+L  +G L MPESPRWL   G  + AKK+L+K   +K+     + DIKEA                  + EG  KEL     P VR  ++A +G+ F QQ  G ++++ Y+P+ F   G       +L TV +G V
Sbjct:  138 QLMITVGILLSYIVNYIFADAE---AWRWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEESKAKKILEKLRGTKDIDQ-EIHDIKEAE----------------KQDEGGLKELF---DPWVRPALIAGLGLAFLQQFIGTNTIIYYAPKTFTNVGF-GNSASILGTVGIGTV 287          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: CSBC_BACSU (Probable metabolite transport protein csbC OS=Bacillus subtilis GN=csbC PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 60/168 (35.71%), Postives = 92/168 (54.76%), Query Frame = 2
Query:   26 GILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVGFV 529
            GILL Y+ NY F+       WR M+G+ A+P+VL  +G   MPESPRWLV +G   +A+++++ T D K+  M  LA++K+             +  K     GV K   +RP      +++  VG+  FQQA GI++V+ Y+P IF KAG+       L T+ +G +
Sbjct:  145 GILLAYIVNYLFTPFE---AWRWMVGLAAVPAVLLLIGIAFMPESPRWLVKRGSEEEARRIMNITHDPKDIEM-ELAEMKQG------------EAEKKETTLGVLKAKWIRP------MLLIGVGLAIFQQAVGINTVIYYAPTIFTKAGL-GTSASALGTMGIGIL 289          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: XYLT_LACBR (D-xylose-proton symporter OS=Lactobacillus brevis GN=xylT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.906e-19
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLR-LADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ +  GILL Y++NY FS    + GWR MLG  AIP+ L  +G L +PESPR+LV  G L +A+ VLD  +   + ++ + + DI+E+A I                  G W EL  +    VR  ++  +G+  FQQ  G ++V+ Y+P IF   G       LLA + +G
Sbjct:  138 QLMVMTGILLAYITNYSFSGF--YTGWRWMLGFAAIPAALLFLGGLILPESPRFLVKSGHLDEARHVLDTMNKHDQVAVNKEINDIQESAKIV----------------SGGWSELFGK---MVRPSLIIGIGLAIFQQVMGCNTVLYYAPTIFTDVGF-GVSAALLAHIGIG 288          
BLAST of CX289069 vs. ExPASy Swiss-Prot
Match: GALP_ECOLI (Galactose-proton symporter OS=Escherichia coli (strain K12) GN=galP PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.336e-16
Identity = 53/172 (30.81%), Postives = 88/172 (51.16%), Query Frame = 2
Query:    8 EVFINGGILLGYVSNYGFSKLPLHLGWRMMLGIGAIPSVLPAVGALAMPESPRWLVMQGRLADAKKVLDKTSDSKEESMLRLADIKEAAGIPEDCNDDVVQVPKINRGEGVWKELLVRPTPAVRHIIVAAVGIHFFQQASGIDSVVLYSPRIFEKAGITSKDEKLLATVAVG 523
            ++ I  GIL  Y+S+  FS       WR MLG+  IP++L  +G   +P+SPRW   + R  DA++VL +  D+  E+   L +I+E+  + +              G  ++KE         R  +   V +   QQ +G++ ++ Y+P+IFE AG T+  E++  TV VG
Sbjct:  147 QLMITIGILGAYLSDTAFSYTG---AWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRESLQVKQS-------------GWALFKE-----NSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQMWGTVIVG 297          
The following BLAST results are available for this feature:
BLAST of CX289069 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PLT5_ARATH2.242e-7273.33Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT1_ARATH9.421e-7173.18Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT2_ARATH2.741e-7072.63Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT6_ARATH7.482e-6061.45Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT3_ARATH6.349e-5158.19Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT4_ARATH6.585e-4048.88Probable polyol transporter 4 OS=Arabidopsis thali... [more]
YWTG_BACSU6.846e-2136.21Putative metabolite transport protein ywtG OS=Baci... [more]
CSBC_BACSU2.602e-2035.71Probable metabolite transport protein csbC OS=Baci... [more]
XYLT_LACBR4.906e-1934.68D-xylose-proton symporter OS=Lactobacillus brevis ... [more]
GALP_ECOLI1.336e-1630.81Galactose-proton symporter OS=Escherichia coli (st... [more]

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Properties
Property NameValue
Genbank descriptionC02008G04SK IF1 Citrus clementina cDNA clone C02008G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289069 ID=CX289069; Name=CX289069; organism=Citrus clementina; type=EST; length=540bp
ATTTCCTGAGGTTTTCATTAACGGCGGGATATTACTTGGCTACGTCTCGA
ACTACGGATTCTCCAAACTACCCCTCCACTTAGGCTGGCGCATGATGCTC
GGAATCGGCGCCATTCCGTCGGTGCTTCCCGCCGTCGGCGCGTTAGCCAT
GCCAGAATCTCCGCGCTGGCTGGTGATGCAAGGCCGACTCGCCGATGCAA
AGAAAGTTCTCGACAAAACCTCGGACTCGAAAGAGGAGTCTATGCTCAGA
CTCGCCGATATCAAAGAAGCAGCCGGCATTCCTGAAGACTGCAACGACGA
CGTCGTTCAAGTGCCGAAAATCAACCGTGGCGAAGGCGTATGGAAAGAGC
TGCTGGTCCGTCCTACACCGGCCGTTCGTCACATCATAGTCGCAGCCGTT
GGTATTCATTTCTTCCAACAAGCATCCGGCATAGACTCTGTCGTTCTTTA
CAGTCCTAGAATCTTTGAAAAAGCTGGGATTACGTCAAAAGACGAAAAGT
TACTCGCTACTGTAGCCGTTGGATTTGTCAAGACCACTTT
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