CX289082

Overview
NameCX289082
Unique NameCX289082
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289082 vs. ExPASy Swiss-Prot
Match: BCS1B_DICDI (Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum GN=bcsl1b PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.963e-15
Identity = 55/167 (32.93%), Postives = 87/167 (52.10%), Query Frame = 1
Query:   19 DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRR-NGNENNADAQSKAAGAAVRK----NKTDFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGLMDMHIHMSYCGPYGFRLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQFM 504
            D+ L  LL +   RSI+++EDID ++   +   +   N+A+A S ++G    +    N +  +GG     LT SGLLN +DG+ +S G  RI+  TTNH E+LD  L+RPG +D+ I +  C  Y    +   +L     +  L  +    L+    +PAQ+   FM
Sbjct:  281 DTSLNQLLATAPQRSIILLEDIDSAIQTGNHDLSAKSNSANAPSISSGGLQYQGYYGNPSVSSGGSA---LTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCSSYQMEQM---FLKFYPTDFDLAKQFVEKLENYKFSPAQLQAYFM 439          
BLAST of CX289082 vs. ExPASy Swiss-Prot
Match: YL572_MIMIV (Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L572 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.923e-13
Identity = 49/135 (36.30%), Postives = 71/135 (52.59%), Query Frame = 1
Query:   19 DSDLRTLLLSTG-NRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKT---DFAGGKGQHMLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGLMDMHIHMSYCGPYGFRLLAANYLG 411
            D++L  LL +     +ILV+EDIDC+ +    R   E     +      +  +NK         +    LTLSG+LN +DG+++S G  RI++ TTNH E LDPAL+R G +DM I  S C  Y    +  N+ G
Sbjct:   24 DNELINLLNAVNCKETILVLEDIDCASEAVKSR-AKEEETVVEKVTDDKSTLENKILADQLKKVEKVSKLTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIAKMYENFYG 155          
BLAST of CX289082 vs. ExPASy Swiss-Prot
Match: BCS1_YEAST (Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae GN=BCS1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 55/169 (32.54%), Postives = 81/169 (47.93%), Query Frame = 1
Query:   19 DSDLRTLLLSTGNRSILVIEDIDCSVDLPDRRNGNENNADAQSKAAGAAVRKNKTDFAGGKGQHM-LTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGLMDMHIHMSYCGPYGF-RLLAANYLGITDCEHKLVAEIETLLKTINITPAQVAEQFMKSEDA 519
            D  L  L+ +   RSIL++EDID +                           NK    G +G H  +T SGLLN +DG+ SS  +E I   TTNH E+LD A++RPG +D  + +    PY   ++    Y G TD   K V  ++ L   I ++ AQ+   F+ ++DA
Sbjct:  300 DDRLNHLMNNMPERSILLLEDIDAAF--------------------------NKRSQTGEQGFHSSVTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNATPYQVEKMFMKFYPGETDICKKFVNSVKEL--DITVSTAQLQGLFVMNKDA 438          
The following BLAST results are available for this feature:
BLAST of CX289082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BCS1B_DICDI4.963e-1532.93Probable mitochondrial chaperone BCS1-B OS=Dictyos... [more]
YL572_MIMIV7.923e-1336.30Putative AAA family ATPase L572 OS=Acanthamoeba po... [more]
BCS1_YEAST5.136e-1232.54Mitochondrial chaperone BCS1 OS=Saccharomyces cere... [more]
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Properties
Property NameValue
Genbank descriptionC02008H07SK IF1 Citrus clementina cDNA clone C02008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289082 ID=CX289082; Name=CX289082; organism=Citrus clementina; type=EST; length=574bp
ATCCGGCACGAGGCCCGTGACTCCGATCTAAGGACTCTCTTGCTCAGTAC
TGGGAATAGATCAATCCTTGTCATCGAAGACATTGATTGCAGTGTCGACT
TGCCTGATCGCCGAAATGGAAATGAAAATAATGCTGATGCTCAGTCCAAG
GCCGCGGGCGCAGCTGTCCGCAAAAACAAGACCGACTTCGCTGGCGGAAA
GGGACAGCATATGTTGACATTGTCGGGGCTGCTGAACTTCATTGATGGAC
TATGGTCCAGTTGTGGTGACGAGAGGATTATCGTATTCACGACCAACCAC
AAGGAGAGGCTGGATCCTGCTTTGCTGCGTCCAGGACTCATGGACATGCA
CATTCACATGTCATATTGCGGCCCTTATGGGTTCAGGCTGTTAGCTGCTA
ATTACTTGGGCATTACCGATTGTGAGCACAAGCTTGTTGCGGAGATTGAG
ACCTTACTAAAGACCATCAACATAACTCCTGCTCAAGTCGCGGAACAGTT
TATGAAGAGTGAAGACGCTGATGTTGCGCTTGCAGCACTTATCAAACTCC
TCAAAGAGAAGGAGCGCAATGGCA
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