CX289090

Overview
NameCX289090
Unique NameCX289090
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_CASSA (60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.267e-54
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 1
Query:  121 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            MVTFRFHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL
Sbjct:    1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_ORYSJ (60S ribosomal protein L18a OS=Oryza sativa subsp. japonica GN=RPL18A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.982e-51
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 1
Query:  121 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            M  FRFHQYQVVGR LPT  DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTL
Sbjct:    1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTL 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: R18A2_ARATH (60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.381e-51
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 1
Query:  121 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            M  FRFHQYQVVGRALPTEKD  PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTL
Sbjct:    1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTL 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: R18A3_ARATH (60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.285e-50
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 1
Query:  130 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            FRFHQYQVVGRALPTE DEHPKIYRMKLW  NEV AKSKFWYF+RKLKKVKKSNGQMLAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTL
Sbjct:    4 FRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTL 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_CAEEL (60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.023e-31
Identity = 56/95 (58.95%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  139 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            ++Y VVGR +PTEK+    I++M+++ATN V AKS+FWYF+  L++VKK+NG++L+I ++FEKNP  +KNYG+WL+Y SRTG+HNMY+EYRDTT+
Sbjct:   11 NEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTV 105          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL20_YEAST (60S ribosomal protein L20 OS=Saccharomyces cerevisiae GN=RPL20A PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.975e-31
Identity = 56/95 (58.95%), Postives = 81/95 (85.26%), Query Frame = 1
Query:  136 FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            F +YQV+GR LPTE    PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+I E +PTK+KN+G+W+RY SR+G HNMYKE RD +
Sbjct:    4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVS 98          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_DICDI (60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 5.075e-31
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 1
Query:  139 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            H++QVVGR +PTE+D +PKIYRM+L+A   + AKS+FWYFL K+ K+KKS G++L + EIFE  P K+KN+G+++RY SR+G HN+YKEYRD T
Sbjct:    4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEIFEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLT 97          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_SPOFR (60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.250e-29
Identity = 52/94 (55.32%), Postives = 80/94 (85.11%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTL 423
            +Y+V+GR LP+E +  P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++
Sbjct:    9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIPEKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSV 102          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_RAT (60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.633e-29
Identity = 54/93 (58.06%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
BLAST of CX289090 vs. ExPASy Swiss-Prot
Match: RL18A_MOUSE (60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.633e-29
Identity = 54/93 (58.06%), Postives = 76/93 (81.72%), Query Frame = 1
Query:  142 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT 420
            +Y+VVGR LPT K   P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++   ++FEK+P ++KN+GIWLRY SR+G HNMY+EYRD T
Sbjct:    9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLT 101          
The following BLAST results are available for this feature:
BLAST of CX289090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL18A_CASSA3.267e-5497.0360S ribosomal protein L18a OS=Castanea sativa GN=R... [more]
RL18A_ORYSJ1.982e-5193.0760S ribosomal protein L18a OS=Oryza sativa subsp. ... [more]
R18A2_ARATH3.381e-5193.0760S ribosomal protein L18a-2 OS=Arabidopsis thalia... [more]
R18A3_ARATH1.285e-5093.8860S ribosomal protein L18a-3 OS=Arabidopsis thalia... [more]
RL18A_CAEEL1.023e-3158.9560S ribosomal protein L18a OS=Caenorhabditis elega... [more]
RL20_YEAST2.975e-3158.9560S ribosomal protein L20 OS=Saccharomyces cerevis... [more]
RL18A_DICDI5.075e-3159.5760S ribosomal protein L18a OS=Dictyostelium discoi... [more]
RL18A_SPOFR1.250e-2955.3260S ribosomal protein L18a OS=Spodoptera frugiperd... [more]
RL18A_RAT1.633e-2958.0660S ribosomal protein L18a OS=Rattus norvegicus GN... [more]
RL18A_MOUSE1.633e-2958.0660S ribosomal protein L18a OS=Mus musculus GN=Rpl1... [more]

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Properties
Property NameValue
Genbank descriptionC02009A06SK IF1 Citrus clementina cDNA clone C02009A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289090 ID=CX289090; Name=CX289090; organism=Citrus clementina; type=EST; length=425bp
CAGGAATTCGGCACGAGGTGGTCCTAGGGTTTTGGCACCAAACCCTCAAT
GCAAAGCGCCGCATATAAACCCCGGTTCCCCTCCTTCACCTGCAGTGAGC
CAGCTCTCCTTGGAGGAAAAATGGTTACCTTCAGGTTTCACCAGTACCAG
GTTGTGGGAAGAGCTTTGCCCACAGAAAAGGATGAGCATCCCAAGATTTA
CAGAATGAAGCTCTGGGCCACCAACGAGGTTCGTGCCAAATCCAAGTTCT
GGTATTTCTTGAGGAAGCTGAAGAAAGTTAAGAAGAGTAATGGGCAGATG
TTAGCAATCAATGAGATTTTTGAGAAGAATCCTACCAAAATTAAGAACTA
TGGAATCTGGTTGCGATATCAAAGCCGAACTGGGTATCACAATATGTACA
AGGAATATCGAGACACTACTCTTAA
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