CX289103

Overview
NameCX289103
Unique NameCX289103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length340
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig172 contig Ccv1_Contig172:1..340. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: APRR5_ARATH (Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.068e-17
Identity = 39/47 (82.98%), Postives = 46/47 (97.87%), Query Frame = 2
Query:    5 QRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKN 145
            QR+AALTKFR+KRKDRCY+KKVRY+SRK LAEQRPR+KGQFVRQV++
Sbjct:  508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFVRQVQS 554          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: APRR9_ARATH (Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.313e-17
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 2
Query:    2 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 148
            SQR+AAL KFRLKRKDRC+DKKVRYQSRK LAEQRPRVKGQFVR V ++
Sbjct:  415 SQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFVRTVNSD 463          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: PRR95_ORYSJ (Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.637e-16
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 2
Query:    2 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 136
            SQR+AAL KFRLKRKDRC++KKVRYQSRK LAEQRPRVKGQFVRQ
Sbjct:  572 SQREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFVRQ 616          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: APRR7_ARATH (Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.232e-15
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 2
Query:    2 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKD 157
            SQR+AALTKFR KRK+RC+ KKVRYQSRK LAEQRPRV+GQFVR+    T D
Sbjct:  667 SQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDD 718          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: APRR3_ARATH (Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.210e-14
Identity = 36/56 (64.29%), Postives = 47/56 (83.93%), Query Frame = 2
Query:    2 SQRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDANAD 169
            +QR+AAL KFRLKRK+RC++KKVRY SRK LAEQRP VKGQF+R+ +++ K  + D
Sbjct:  440 AQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRK-RDDHKSGSED 494          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: PRR1_ORYSJ (Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.079e-13
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 2
Query:    5 QRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 136
            +R AAL KFRLKRK+RC+DKKVRY +RK LAE RPRV+GQFVRQ
Sbjct:  442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFVRQ 485          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: APRR1_ARATH (Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.146e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    5 QRDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNETKDAN 163
            +R+ AL KFR KR  RC+DKK+RY +RK LAE+RPRVKGQFVR++     D N
Sbjct:  532 RREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNVDLN 584          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSJ (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. japonica GN=PRR73 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    8 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 148
            R+AAL KFR KRK R + KKVRYQSRK LAEQRPR++GQFVRQ   E
Sbjct:  712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: PRR73_ORYSI (Two-component response regulator-like PRR73 OS=Oryza sativa subsp. indica GN=PRR73 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    8 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQVKNE 148
            R+AAL KFR KRK R + KKVRYQSRK LAEQRPR++GQFVRQ   E
Sbjct:  712 REAALNKFRQKRKVRNFGKKVRYQSRKRLAEQRPRIRGQFVRQSGQE 758          
BLAST of CX289103 vs. ExPASy Swiss-Prot
Match: PRR37_ORYSJ (Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.357e-11
Identity = 33/43 (76.74%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    8 RDAALTKFRLKRKDRCYDKKVRYQSRKSLAEQRPRVKGQFVRQ 136
            R AA+ KFR KRK+R + KKVRYQSRK LAEQRPRV+GQFVRQ
Sbjct:  682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFVRQ 724          
The following BLAST results are available for this feature:
BLAST of CX289103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
APRR5_ARATH4.068e-1782.98Two-component response regulator-like APRR5 OS=Ara... [more]
APRR9_ARATH5.313e-1783.67Two-component response regulator-like APRR9 OS=Ara... [more]
PRR95_ORYSJ2.637e-1688.89Two-component response regulator-like PRR95 OS=Ory... [more]
APRR7_ARATH2.232e-1575.00Two-component response regulator-like APRR7 OS=Ara... [more]
APRR3_ARATH4.210e-1464.29Two-component response regulator-like APRR3 OS=Ara... [more]
PRR1_ORYSJ6.079e-1377.27Two-component response regulator-like PRR1 OS=Oryz... [more]
APRR1_ARATH5.146e-1260.38Two-component response regulator-like APRR1 OS=Ara... [more]
PRR73_ORYSJ1.497e-1172.34Two-component response regulator-like PRR73 OS=Ory... [more]
PRR73_ORYSI1.497e-1172.34Two-component response regulator-like PRR73 OS=Ory... [more]
PRR37_ORYSJ4.357e-1176.74Two-component response regulator-like PRR37 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC02009B08SK IF1 Citrus clementina cDNA clone C02009B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289103 ID=CX289103; Name=CX289103; organism=Citrus clementina; type=EST; length=340bp
CAGCCAAAGGGATGCAGCTTTGACAAAATTCCGGCTCAAGCGGAAAGATA
GATGCTATGACAAAAAGGTTCGATACCAAAGCCGGAAAAGTTTAGCAGAG
CAACGACCCCGGGTCAAAGGACAGTTTGTTCGTCAAGTGAAAAATGAAAC
CAAAGATGCTAACGCCGATGGTTGTCCTTAATCTTGAGTAATGCACTTAT
GTGTAATTTAATTTCTCCTTCGTGGAATATAGGTCTCTAGTATGTTGTTA
TTTTCAGAAAGCAGAGGTGGATCATTTGACAGCTTCGAATATTGCAGGTT
CTTTTGGAGTTGATGCGACCATCTCTCAACTTTTCCCATT
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