CX289104

Overview
NameCX289104
Unique NameCX289104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length269
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig900 contig Ccv1_Contig900:548..816. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.467e-40
Identity = 80/88 (90.91%), Postives = 83/88 (94.32%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+
Sbjct:  160 NVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 5.006e-39
Identity = 78/89 (87.64%), Postives = 83/89 (93.26%), Query Frame = 2
Query:    2 DNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            DNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+
Sbjct:  100 DNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKA 188          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.902e-38
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKS
Sbjct:  160 NIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKS 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 3.245e-38
Identity = 77/88 (87.50%), Postives = 81/88 (92.05%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +
Sbjct:  160 NVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 3.245e-38
Identity = 76/88 (86.36%), Postives = 81/88 (92.05%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+
Sbjct:  160 NVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 4.238e-38
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +
Sbjct:  160 NVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 5.535e-38
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII S
Sbjct:  160 NVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINS 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 6.119e-37
Identity = 76/88 (86.36%), Postives = 79/88 (89.77%), Query Frame = 2
Query:    5 NVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +
Sbjct:  160 NGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 1.507e-35
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  161 VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CX289104 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 1.507e-35
Identity = 72/87 (82.76%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    8 VVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 268
            VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  161 VVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CX289104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY3.467e-4090.91Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_LACSA5.006e-3987.64Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_COPJA1.902e-3884.09Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE3.245e-3887.50Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ARATH3.245e-3886.36Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_MAIZE4.238e-3887.50Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ORYSJ5.535e-3888.64Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU6.119e-3786.36Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU1.507e-3582.76Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA1.507e-3582.76Triosephosphate isomerase OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC02009B09SK IF1 Citrus clementina cDNA clone C02009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289104 ID=CX289104; Name=CX289104; organism=Citrus clementina; type=EST; length=269bp
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTG
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