CX289105

Overview
NameCX289105
Unique NameCX289105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length287
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11037 contig Ccv1_Contig11037:867..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS_ACTDE (Delta-1-pyrroline-5-carboxylate synthetase OS=Actinidia deliciosa PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.170e-32
Identity = 73/97 (75.26%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G+R+GTLFHRDA  W  V  VGAR+MAVAARESSRRLQA+  QDR KILLDV DALEANE LI+ +NEAD+ AAQ+AGY KSL+SRLALK GKISSL
Sbjct:  273 GERIGTLFHRDAQKWAPVGDVGARDMAVAARESSRRLQAMSPQDRSKILLDVADALEANEKLIRIENEADLAAAQQAGYEKSLISRLALKSGKISSL 369          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS_MESCR (Delta-1-pyrroline-5-carboxylate synthetase OS=Mesembryanthemum crystallinum GN=P5CS PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.915e-31
Identity = 69/97 (71.13%), Postives = 82/97 (84.54%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWV--KQVGAREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G+ VGTLFH+DAHLWV  K+ G R+MAVAARESSRRLQA+ S++R+KILLD+ DALEANE  I A+NEADV AAQ AGY +SLV+RLA+ P KISSL
Sbjct:  270 GQCVGTLFHKDAHLWVQVKETGVRDMAVAARESSRRLQAVSSEERKKILLDIADALEANEEKILAENEADVAAAQYAGYDRSLVARLAMNPDKISSL 366          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS2_ARATH (Delta-1-pyrroline-5-carboxylate synthetase B OS=Arabidopsis thaliana GN=P5CSB PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.581e-29
Identity = 66/97 (68.04%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWVKQVG--AREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G RVGTLFH+DAHLW   V   +R+MAVAARESSR+LQAL S+DR++IL D+ +ALE NE  IKA+N+ DV AAQEAGY +SLV+RL +KPGKISSL
Sbjct:  273 GLRVGTLFHQDAHLWAPVVDTTSRDMAVAARESSRKLQALSSEDRKQILHDIANALEVNEKTIKAENDLDVAAAQEAGYEESLVARLVMKPGKISSL 369          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS_SOLLC (Delta-1-pyrroline-5-carboxylate synthetase OS=Solanum lycopersicum GN=PRO2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.065e-29
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G+R+GTLFH DA+ W  + +  AREMAVAAR  SRRLQAL SQ+R KIL D+ DALEANE  I A+NEADV AAQ+AGY KSL+SRLAL PGKISSL
Sbjct:  273 GERIGTLFHCDANKWASIGETDAREMAVAARACSRRLQALSSQERSKILQDIADALEANEKAILAENEADVVAAQQAGYEKSLISRLALNPGKISSL 369          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS_ORYSJ (Delta-1-pyrroline-5-carboxylate synthetase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 7.846e-29
Identity = 64/97 (65.98%), Postives = 80/97 (82.47%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLWV--KQVGAREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G+++GTLFH++A+LW   K V  REMAVAAR+ SR LQ L S++R+KILLDV DALEANE LI+++NEADV AAQ AGY K LV+RL +KPGKI+SL
Sbjct:  273 GEKIGTLFHKNANLWESSKDVSTREMAVAARDCSRHLQNLSSEERKKILLDVADALEANEDLIRSENEADVAAAQVAGYEKPLVARLTIKPGKIASL 369          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS1_ARATH (Delta-1-pyrroline-5-carboxylate synthetase A OS=Arabidopsis thaliana GN=P5CSA PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.025e-28
Identity = 65/97 (67.01%), Postives = 79/97 (81.44%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAARESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G RVGTLFH+DA LW  +    AR+MAVAARESSR+LQAL S+DR+KILLD+ DALEAN + IKA+NE DV +AQEAG  +S+V+RL + PGKISSL
Sbjct:  273 GLRVGTLFHQDARLWAPITDSNARDMAVAARESSRKLQALSSEDRKKILLDIADALEANVTTIKAENELDVASAQEAGLEESMVARLVMTPGKISSL 369          
BLAST of CX289105 vs. ExPASy Swiss-Prot
Match: P5CS_VIGAC (Delta-1-pyrroline-5-carboxylate synthetase OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.760e-26
Identity = 68/100 (68.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:    1 GKRVGTLFHRDAHLW--VKQVGAREMAVAA---RESSRRLQALQSQDRRKILLDVPDALEANESLIKADNEADVPAAQEAGYAKSLVSRLALKPGKISSL 285
            G+R+GTLFH+DAH W  VK+V AREMAVAA   RE SRR   LQ +   KILL + DALEANE +I+ +NEADV AAQEAGY KSLV+RLALKPGKI+SL
Sbjct:  274 GQRIGTLFHKDAHEWAQVKEVDAREMAVAAGNVREGSRRY--LQRKGN-KILLKIADALEANEKIIRIENEADVTAAQEAGYEKSLVARLALKPGKIASL 370          
The following BLAST results are available for this feature:
BLAST of CX289105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
P5CS_ACTDE1.170e-3275.26Delta-1-pyrroline-5-carboxylate synthetase OS=Acti... [more]
P5CS_MESCR4.915e-3171.13Delta-1-pyrroline-5-carboxylate synthetase OS=Mese... [more]
P5CS2_ARATH1.581e-2968.04Delta-1-pyrroline-5-carboxylate synthetase B OS=Ar... [more]
P5CS_SOLLC2.065e-2970.10Delta-1-pyrroline-5-carboxylate synthetase OS=Sola... [more]
P5CS_ORYSJ7.846e-2965.98Delta-1-pyrroline-5-carboxylate synthetase OS=Oryz... [more]
P5CS1_ARATH1.025e-2867.01Delta-1-pyrroline-5-carboxylate synthetase A OS=Ar... [more]
P5CS_VIGAC4.760e-2668.00Delta-1-pyrroline-5-carboxylate synthetase OS=Vign... [more]
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Properties
Property NameValue
Genbank descriptionC02009B10SK IF1 Citrus clementina cDNA clone C02009B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289105 ID=CX289105; Name=CX289105; organism=Citrus clementina; type=EST; length=287bp
GGAAAGCGTGTTGGGACTCTCTTTCATAGAGATGCACATTTGTGGGTAAA
ACAAGTTGGGGCCCGTGAGATGGCAGTTGCAGCACGAGAAAGTTCTAGAC
GGCTTCAGGCTCTACAATCTCAAGATAGGAGGAAAATTTTGCTCGACGTA
CCTGATGCCTTAGAGGCAAATGAAAGCTTGATTAAGGCTGACAATGAAGC
CGATGTACCTGCTGCACAGGAAGCTGGATATGCGAAATCACTAGTATCAC
GTTTGGCACTGAAGCCTGGGAAGATCTCTAGCCTTGC
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