CX289112

Overview
NameCX289112
Unique NameCX289112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length453
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1157 contig Ccv1_Contig1157:63..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.852e-49
Identity = 98/151 (64.90%), Postives = 107/151 (70.86%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEP-ITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YEL VLR RGPRRM C M +IP   I+EGG APTPT    S DE   + ++ KGKEP I +                  PL LKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA+V+PS  +P AEQEKVILQFGKIGKDIFTMDY Y
Sbjct:  256 YELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRY 406          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 5.042e-41
Identity = 88/153 (57.52%), Postives = 101/153 (66.01%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVE---PSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVLRTRGPRRM CIM +IP S+I+EGG   +PT F              K K+P+                   +PL LKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQLVAA      + N+P  EQ++VILQFGKIGKDIFTMDY Y
Sbjct:  252 YELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQ---------GKKKKKPLM----DFCSGNLGGESVIKEPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEAGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRY 391          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 8.601e-41
Identity = 90/151 (59.60%), Postives = 102/151 (67.55%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPL-AEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL  RGPRRMNCIMD+IP S+++EGG APT T F  S  + F S +  + K                      + L LKNK+PRWHEQLQCWCLNFRGRVTVASVKNFQLVA+ E   N P   EQ+KVILQFGKIGKD+FTMDY Y
Sbjct:  240 YELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSA------RIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDE---NGPTNQEQDKVILQFGKIGKDLFTMDYRY 381          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.242e-39
Identity = 89/150 (59.33%), Postives = 100/150 (66.67%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVLRTRGPRRM+C MD+IP SS+    A P   S  Q  +E   S  S KG+   T                  QPL LKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQLVA ++ S + P  E E+VILQFGKIGKDIFTMDY Y
Sbjct:  233 YELNVLRTRGPRRMHCAMDSIPLSSVI---AEP---SVVQGIEEEVSSSPSPKGETITT-----DKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFGKIGKDIFTMDYRY 371          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.767e-39
Identity = 85/150 (56.67%), Postives = 96/150 (64.00%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL +RGPRRM+C MD+IP S+IE+GG APT T F  S+ E F S    K K                        L LKNK+PRWHE LQCWCLNF GRVTVASVKNFQLVA+ E   N    E + VILQFGK+GKD+FTMDY Y
Sbjct:  243 YELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKS------VRANNSTASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDE--SNPTNQEHDDVILQFGKVGKDMFTMDYRY 384          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 3.614e-39
Identity = 86/150 (57.33%), Postives = 95/150 (63.33%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPTSFAQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL +RGPRRM C+MD IP S++E GG APT T    S  + F SF+  + K                        L LKNKAPRWHEQLQCWCLNF GRVTVASVKNFQLVAA E     P  E E VILQFGK+GKD+FTMDY Y
Sbjct:  241 YELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKS----IRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGP--EHENVILQFGKVGKDVFTMDYQY 384          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.218e-38
Identity = 89/175 (50.86%), Postives = 104/175 (59.43%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPT-PTS-FAQSFDELFFS--------------FTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQ---------EKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRMNC+M +IP SS+E GG  P  P S  A+S DE F S              F+S +  +                     +PL L+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVAA +P+   P   Q         +KVILQFGK+ KD+FTMDY Y
Sbjct:  249 YELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRY 423          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 7.535e-37
Identity = 90/180 (50.00%), Postives = 104/180 (57.78%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPTPT------------------SFAQS-FDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLA-----------EQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM+CIM++IP SS+E GG+ P                     SF++S FD     F+S +  E                     +PL LKNK PRWHEQLQCWCLNFRGRVTVASVKNFQLVAA +P      A           EQ+KVILQFGK+GKD+FTMDY Y
Sbjct:  251 YELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDFSSSRFSE-------MGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRY 423          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 8.331e-36
Identity = 85/177 (48.02%), Postives = 99/177 (55.93%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAPT-PTSF-AQSFDELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ----------------PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPL---------AEQEKVILQFGKIGKDIFTMDYHY 451
            YELNV  TRGPRRM C+M +IP SS+E GG  P+ P S  A S +E  F   S      + +                                  PL L+NKAPRWHEQLQCWCLNFRGRVTVASVKNFQL+AA +P+   P           E +KVILQFGK+ KD+FTMDYHY
Sbjct:  242 YELNVFGTRGPRRMCCLMHSIPASSLEAGGTVPSQPDSILAHSLNESSFRSVSFSKSSVMDHSMHFSSAQFSDISIGDGPRIGGRVLSDDEECKETPLILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSQPVPPPPPEHDKVILQFGKVAKDMFTMDYHY 418          
BLAST of CX289112 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.088e-35
Identity = 83/175 (47.43%), Postives = 102/175 (58.29%), Query Frame = 2
Query:    2 YELNVLRTRGPRRMNCIMDTIPFSSIEEGGAAP------TPTSFAQSFD-----------ELFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ-PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAA-VEPSHNVPL------AEQEKVILQFGKIGKDIFTMDYHY 451
            YELNVL TRGPRRM+C+M +IP SS+E GG  P       P +F +SF            +    F+S +      +                 + PL L+NKAPRWHEQLQCWCLNFRGRVT+ASVKNFQL+AA  +P    P        EQ+K+ILQFGK+ KD+FTMDY Y
Sbjct:  249 YELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDYRY 423          
The following BLAST results are available for this feature:
BLAST of CX289112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP5_ORYSJ3.852e-4964.90Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP6_ARATH5.042e-4157.52Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP6_ORYSJ8.601e-4159.60Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH1.242e-3959.33Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP11_ORYSJ2.767e-3956.67Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP3_ARATH3.614e-3957.33Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ5.218e-3850.86Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP10_ARATH7.535e-3750.00Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP13_ORYSJ8.331e-3648.02Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP8_ORYSJ1.088e-3547.43Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionC02009C06SK IF1 Citrus clementina cDNA clone C02009C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289112 ID=CX289112; Name=CX289112; organism=Citrus clementina; type=EST; length=453bp
CTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGAGAATGAATTGCA
TCATGGACACTATTCCTTTCTCTTCCATTGAGGAAGGGGGGGCAGCCCCA
ACACCAACATCTTTCGCACAGTCATTTGATGAGCTATTTTTCTCCTTCAC
AAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCTCTCCAAGCCCCT
CACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCACTGGCTCTTAAA
AATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTGGTGCCTAAATTT
TCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCCAACTTGTGGCAG
CTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAAGAAAAGGTAATT
CTGCAATTTGGAAAGATCGGAAAAGATATCTTCACTATGGATTATCACTA
CCC
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