CX289115

Overview
NameCX289115
Unique NameCX289115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length143
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289115 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.029e-12
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 2
Query:    2 RHEGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFLFWLNRDPDAE 142
            + +G++GLGF+EIAVG+AVPVW NMVEQGLV E VF FWLNR+ + E
Sbjct:  192 KFDGLLGLGFQEIAVGNAVPVWYNMVEQGLVKEPVFSFWLNRNVEEE 238          
BLAST of CX289115 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.293e-12
Identity = 32/45 (71.11%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 RHEGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFLFWLNRDPD 136
            + +GI+GLGF+EI+VGDAVPVW  MVEQGLVSE VF FW NR  D
Sbjct:  188 KFDGILGLGFQEISVGDAVPVWYKMVEQGLVSEPVFSFWFNRHSD 232          
BLAST of CX289115 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.712e-12
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 2
Query:    2 RHEGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFLFWLNRDPDAE 142
            + +GI+GLGF+EI+VGDAVPVW  M+ QGLV E VF FWLNR+ D +
Sbjct:  154 KFDGILGLGFQEISVGDAVPVWYTMLNQGLVQEPVFSFWLNRNADEQ 200          
BLAST of CX289115 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.486e-11
Identity = 30/45 (66.67%), Postives = 37/45 (82.22%), Query Frame = 2
Query:    2 RHEGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFLFWLNRDPD 136
            + +GI+GLGF+EI+VG AVPVW  M+EQGLVS+ VF FWLNR  D
Sbjct:  187 KFDGILGLGFKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVD 231          
BLAST of CX289115 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.375e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 2
Query:    2 RHEGIIGLGFREIAVGDAVPVWDNMVEQGLVSEEVFLFWLNRDPDA 139
            + +GI+GLG+ EI+VG A P+W +M EQ L++++VF FWLNRDPDA
Sbjct:  180 KFDGILGLGYPEISVGKAPPIWQSMQEQELLADDVFSFWLNRDPDA 225          
The following BLAST results are available for this feature:
BLAST of CX289115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ASPR_CUCPE1.029e-1268.09Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ2.293e-1271.11Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
CYPR1_CYNCA8.712e-1263.83Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR_HORVU1.486e-1166.67Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ7.375e-1158.70Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionC02009C09SK IF1 Citrus clementina cDNA clone C02009C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289115 ID=CX289115; Name=CX289115; organism=Citrus clementina; type=EST; length=143bp
TCGGCACGAGGGAATAATAGGGCTTGGGTTCCGGGAAATTGCAGTTGGGG
ATGCTGTGCCTGTGTGGGACAATATGGTTGAGCAGGGCCTTGTAAGCGAG
GAGGTCTTCTTATTCTGGCTCAACAGGGATCCAGACGCTGAAC
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