CX289117
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1) HSP 1 Score: 225.328 bits (573), Expect = 7.424e-59 Identity = 104/136 (76.47%), Postives = 115/136 (84.56%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408 RHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CN Sbjct: 28 RHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCN 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1) HSP 1 Score: 222.631 bits (566), Expect = 4.812e-58 Identity = 105/136 (77.21%), Postives = 114/136 (83.82%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408 RHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTDFREATCRQYEEN CN Sbjct: 28 RHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCN 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 1.892e-54 Identity = 98/136 (72.06%), Postives = 110/136 (80.88%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408 RHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG +DP KIQ SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+DFREATCRQYEEN CN Sbjct: 28 RHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCN 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 2.471e-54 Identity = 94/136 (69.12%), Postives = 112/136 (82.35%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVCN 408 RHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A A L GRFY+GRPIIV++SPVTDFREATCRQ+EEN CN Sbjct: 28 RHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCN 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4) HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33 Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE C Sbjct: 28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3) HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33 Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE C Sbjct: 28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 6.997e-33 Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHGDRCSRLH KP+ S T+ L N+Y+ P + D A+ ++Q+H KYGE+E +N+CDNL DH+VGNVYV+FR EE A A+ +LN R++ G+PI + SPVTDFREA CRQYE C Sbjct: 28 RHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMGEC 163
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_SCHPO (Splicing factor U2AF 23 kDa subunit OS=Schizosaccharomyces pombe GN=SPAP8A3.06 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 2.659e-32 Identity = 64/135 (47.41%), Postives = 87/135 (64.44%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHG+RCSR H KP+ S T+L NMY+ P +P G+ R++ + SKYGE+E L +CDN+ DH+VGNVYV+F+ EE A NA+ +LN R+Y+ RP+ + SPVTDFREA CRQ+E + C Sbjct: 28 RHGERCSRKHVKPNFSQTILCPNMYKNPIH-----EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHETSEC 157
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF1_DROME (Splicing factor U2af 38 kDa subunit OS=Drosophila melanogaster GN=U2af38 PE=1 SV=2) HSP 1 Score: 135.191 bits (339), Expect = 1.010e-31 Identity = 65/138 (47.10%), Postives = 83/138 (60.14%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQA--LDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHGDRCSR+H KP+ S T+LL N+Y P D + ++Q+H KYGEIE +N+CDNL DH+VGNVY++FR E A A +LN R++ GRP+ + SPVTDFREA CRQYE C Sbjct: 28 RHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAKSADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEADAEKAANDLNNRWFGGRPVYSELSPVTDFREACCRQYEMGEC 165
BLAST of CX289117 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.320e-31 Identity = 64/136 (47.06%), Postives = 84/136 (61.76%), Query Frame = 1 Query: 1 RHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXS-KYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTDFREATCRQYEENVC 405 RHGDRCSRLH KP+ S T++L N+Y+ P D + ++Q+H KYGEIE +N+CDNL DH+VGNVYV+FR EE A A+ LN R++ G+ + + SPVTDFRE+ CRQYE C Sbjct: 28 RHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTDFRESCCRQYEMGEC 163 The following BLAST results are available for this feature:
BLAST of CX289117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289117 ID=CX289117; Name=CX289117; organism=Citrus clementina; type=EST; length=409bpback to top |