CX289122

Overview
NameCX289122
Unique NameCX289122
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7570 contig Ccv1_Contig7570:474..903. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_OCIBA (Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilicum GN=CAD1 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.044e-47
Identity = 96/142 (67.61%), Postives = 104/142 (73.24%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLKQS                   AKAMGHHVTVISSSDKKR EA++HLGAD YLVSSDA RMQEAADSLDYIIDTVP  HPLEPY             GV+NTP+QF++
Sbjct:  144 KFVVKIPDGMAPEQAAPLLCAGVTVYSPLNHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRAEALDHLGADDYLVSSDAARMQEAADSLDYIIDTVPVFHPLEPYLSLLKIDGKLILMGVVNTPLQFVS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_TOBAC (Probable cinnamyl alcohol dehydrogenase 1 OS=Nicotiana tabacum GN=CAD14 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 91/142 (64.08%), Postives = 102/142 (71.83%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP+GMA EQAAPLLCAG+TV+SPL+HFG KQS                   AKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEA+DSLDYIIDTVP  HPLEPY             GVINTP+QF++
Sbjct:  144 KFVVKIPEGMAPEQAAPLLCAGITVYSPLNHFGFKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEASDSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH1_ARACO (Probable cinnamyl alcohol dehydrogenase 1 OS=Aralia cordata GN=CAD1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.860e-45
Identity = 95/143 (66.43%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQ-SXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIPDGMA EQAAPLLCAGVTV+SPL+HFGLK+ S                   AKAMGHHVTVISSSDKK+ EA++HLGAD YLVSSDAT+MQEAADSLDYIIDTVP  HPLEPY             GVINTP+QF++
Sbjct:  144 KFVVKIPDGMAPEQAAPLLCAGVTVYSPLTHFGLKEISGLRGGILGLGGVGHMGVKLAKAMGHHVTVISSSDKKKEEAIDHLGADAYLVSSDATQMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFIS 286          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_POPDE (Probable cinnamyl alcohol dehydrogenase OS=Populus deltoides PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.414e-44
Identity = 92/142 (64.79%), Postives = 100/142 (70.42%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVV+IPDGM+ EQAAPLLCAG+TV+SPL HFGLKQS                   AKAMGHHVTVISSSDKKR EAMEHLGAD+YLVSSD   MQ+AAD LDYIIDTVP  HPLEPY             GVIN P+QF+T
Sbjct:  144 KFVVRIPDGMSPEQAAPLLCAGLTVYSPLKHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAMEHLGADEYLVSSDVESMQKAADQLDYIIDTVPVVHPLEPYLSLLKLDGKLILMGVINAPLQFVT 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH4_ARATH (Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis thaliana GN=CAD4 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.042e-43
Identity = 90/142 (63.38%), Postives = 99/142 (69.72%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGL  S                   AKAMGHHVTVISSSDKK+ EA+EHLGAD Y+VSSD   MQ  ADSLDYIIDTVP  HPL+PY             GVINTP+QF+T
Sbjct:  145 KFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLMASGLKGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKKEEAIEHLGADDYVVSSDPAEMQRLADSLDYIIDTVPVFHPLDPYLACLKLDGKLILMGVINTPLQFVT 286          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_MEDSA (Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.549e-43
Identity = 90/142 (63.38%), Postives = 98/142 (69.01%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP+G+A EQ APLLCAGVTV+SPLSHFGLK                     AKA+GHHVTVISSSDKK+ EA+E LGAD YLVSSD   MQEAADSLDYIIDTVP  HPLEPY             GVINTP+QF+T
Sbjct:  145 KFVVKIPEGLAPEQVAPLLCAGVTVYSPLSHFGLKTPGLRGGILGLGGVGHMGVKVAKALGHHVTVISSSDKKKKEALEDLGADNYLVSSDTVGMQEAADSLDYIIDTVPVGHPLEPYLSLLKIDGKLILMGVINTPLQFVT 286          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.323e-42
Identity = 88/141 (62.41%), Postives = 98/141 (69.50%), Query Frame = 3
Query:    6 FVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            FVVKIP+GMA EQAAPLLCAG+TV+SP +HFG  QS                   AKAMGHHVTVISSS+KKR EA+EHLGAD YLVSSD  +MQEAADSLDYIIDTVP  HPLE Y             GVINTP+QF++
Sbjct:  145 FVVKIPEGMAPEQAAPLLCAGITVYSPFNHFGFNQSGFRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRQEALEHLGADDYLVSSDTDKMQEAADSLDYIIDTVPVGHPLELYLSLLKIDGKLILIGVINTPLQFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH_EUCGL (Probable cinnamyl alcohol dehydrogenase OS=Eucalyptus globulus GN=CAD PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.948e-42
Identity = 87/142 (61.27%), Postives = 97/142 (68.31%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            +FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                   AKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY            TGVIN P+QF++
Sbjct:  144 RFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH2_EUCGU (Probable cinnamyl alcohol dehydrogenase 2 OS=Eucalyptus gunnii GN=CAD2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.948e-42
Identity = 87/142 (61.27%), Postives = 97/142 (68.31%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            +FVVKIPDG+  EQAAPL+CAGVTV+SPL  FGLKQS                   AKAMGHHVTVISSSDKKR EA+EHLGAD YLVSSD   M+EA DSLDYI DT+P  HPLEPY            TGVIN P+QF++
Sbjct:  144 RFVVKIPDGLESEQAAPLMCAGVTVYSPLVRFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKRTEALEHLGADAYLVSSDENGMKEATDSLDYIFDTIPVVHPLEPYLALLKLDGKLILTGVINAPLQFIS 285          
BLAST of CX289122 vs. ExPASy Swiss-Prot
Match: CADH5_ARATH (Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis thaliana GN=CAD5 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.568e-42
Identity = 86/142 (60.56%), Postives = 98/142 (69.01%), Query Frame = 3
Query:    3 KFVVKIPDGMALEQAAPLLCAGVTVFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXXAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXXTGVINTPMQFLT 428
            KFVVKIP+GMA+EQAAPLLCAGVTV+SPLSHFGLKQ                    AKAMGHHVTVISSS+KKR EA++ LGAD Y++ SD  +M E ADSLDY+IDTVP +H LEPY             GVIN P+QFLT
Sbjct:  144 KFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLT 285          
The following BLAST results are available for this feature:
BLAST of CX289122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CADH1_OCIBA3.044e-4767.61Cinnamyl alcohol dehydrogenase 1 OS=Ocimum basilic... [more]
CADH1_TOBAC4.860e-4564.08Probable cinnamyl alcohol dehydrogenase 1 OS=Nicot... [more]
CADH1_ARACO4.860e-4566.43Probable cinnamyl alcohol dehydrogenase 1 OS=Arali... [more]
CADH_POPDE1.414e-4464.79Probable cinnamyl alcohol dehydrogenase OS=Populus... [more]
CADH4_ARATH2.042e-4363.38Cinnamyl alcohol dehydrogenase 4 OS=Arabidopsis th... [more]
CADH_MEDSA4.549e-4363.38Probable cinnamyl alcohol dehydrogenase OS=Medicag... [more]
CADH2_TOBAC1.323e-4262.41Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
CADH_EUCGL2.948e-4261.27Probable cinnamyl alcohol dehydrogenase OS=Eucalyp... [more]
CADH2_EUCGU2.948e-4261.27Probable cinnamyl alcohol dehydrogenase 2 OS=Eucal... [more]
CADH5_ARATH6.568e-4260.56Cinnamyl alcohol dehydrogenase 5 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC02009D07SK IF1 Citrus clementina cDNA clone C02009D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289122 ID=CX289122; Name=CX289122; organism=Citrus clementina; type=EST; length=430bp
AAAAGTTTGTGGTGAAAATACCAGATGGAATGGCACTGGAGCAGGCGGCA
CCGCTATTGTGTGCTGGTGTGACAGTGTTCAGTCCCCTGAGCCACTTTGG
ATTGAAGCAGAGCGGGCTGAGAGGAGGAATCTTGGGGCTCGGAGGAGTAG
GCCACATGGGGGTTTTGATAGCTAAGGCGATGGGACACCATGTTACTGTG
ATTAGCTCTTCTGATAAGAAAAGAGTGGAAGCTATGGAGCATCTTGGTGC
CGATCAGTACCTTGTCAGCTCCGACGCAACTCGTATGCAAGAAGCCGCTG
ACTCACTTGATTATATCATTGATACCGTACCCGCAAATCACCCTCTGGAG
CCTTACCTTTCGCTGTTGAAGCTTGATGGAAAGTTGATCTTGACGGGTGT
CATTAACACTCCCATGCAGTTTCTTACCCC
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