CX289138

Overview
NameCX289138
Unique NameCX289138
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length545
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3507 contig Ccv1_Contig3507:1330..1874. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.971e-39
Identity = 79/164 (48.17%), Postives = 95/164 (57.93%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            F  PLF+     NTVAI +++T ALP                PL V+GGIAG+     F+APCRT  +PRE+PP+ WYR    Q+ +AGFLPFSAIYIEL+YIF SVWGH  Y                      ALTYFQL+ EDH+WWW SF+ GGST  FI
Sbjct:  364 FVAPLFIVVILSNTVAITWHSTVALPILTMIEVITIWLFVGFPLTVVGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFI 527          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 82/180 (45.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            F  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GFLPFSAI +ELYYIFA+VWG   Y                      ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG
Sbjct:  383 FSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSG 562          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 82/180 (45.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            F  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GFLPFSAI +ELYYIFA+VWG   Y                      ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG
Sbjct:  383 FSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSG 562          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 82/180 (45.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            F  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GFLPFSAI +ELYYIFA+VWG   Y                      ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG
Sbjct:  383 FSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSG 562          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 8.283e-38
Identity = 82/180 (45.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            F  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP PWY+S +  M + GFLPFSAI +ELYYIFA+VWG   Y                      ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG
Sbjct:  383 FSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSG 562          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 72/180 (40.00%), Postives = 84/180 (46.67%), Query Frame = 2
Query:    2 FCGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            F  P FLT+  +N+V  A  +T ALP                PL V+GGI GKN+ + F APCRT    REIPP P                  AI +ELYYIFA+VWG   Y                      ALTYFQL+ ED+ WWWRS L  GSTG FI          RS+MSG
Sbjct:  383 FSVPFFLTWSVVNSVHWANGSTQALPVTTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQP-----------------CAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSG 545          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 57/179 (31.84%), Postives = 80/179 (44.69%), Query Frame = 2
Query:    5 CGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            CG  F    F+N +AI Y+A+ A+PFG              PL ++G I G+N   +   PCR    PR IP   W+      + + G LPF +I+IE+Y+IF S W ++IY                        TYF L AED+ W W SFL   ST  ++          ++ M G
Sbjct:  369 CGTAF----FINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYG 543          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.378e-23
Identity = 57/179 (31.84%), Postives = 80/179 (44.69%), Query Frame = 2
Query:    5 CGPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFIXXXXXXXXXXRSDMSG 541
            CG  F    F+N +AI Y+A+ A+PFG              PL ++G I G+N   +   PCR    PR IP   W+      + + G LPF +I+IE+Y+IF S W ++IY                        TYF L AED+ W W SFL   ST  ++          ++ M G
Sbjct:  371 CGTAF----FINFIAIYYHASRAIPFGTMVAVCCICFFVILPLNLVGTILGRNLSGQPNFPCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYG 545          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.087e-21
Identity = 53/162 (32.72%), Postives = 77/162 (47.53%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAFI 493
            G +F  F F+N       ++AA+PFG              PL+ LG     + K   + P RT + PR++P   WY +    + M G LPF A++IEL++I  S+W ++ Y                       + YFQL AEDH WWWRSFL  GS+  ++
Sbjct:  422 GIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGISVPLVFLGSYFA-SKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYM 582          
BLAST of CX289138 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.677e-20
Identity = 51/161 (31.68%), Postives = 73/161 (45.34%), Query Frame = 2
Query:    8 GPLFLTFCFLNTVAIAYNATAALPFGXXXXXXXXXXXXXSPLLVLGGIAGKNSKAEFQAPCRTTKYPREIPPLPWYRSAIPQMAMAGFLPFSAIYIELYYIFASVWGHRIYXXXXXXXXXXXXXXXXXXXXXXALTYFQLAAEDHEWWWRSFLCGGSTGAF 490
            G +F  F  +N +     ++AA+PFG              PL  +G   G    A  + P RT + PR+IP   +Y   +P + M G LPF  I+I+L++I  S+W H++Y                       L YF L AED+ W WRSFL  G T  +
Sbjct:  443 GIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNA-IEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVY 602          
The following BLAST results are available for this feature:
BLAST of CX289138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHG1B_DICDI1.971e-3948.17Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_PONAB8.283e-3845.56Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE8.283e-3845.56Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN8.283e-3845.56Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN8.283e-3845.56Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S1_RAT2.953e-2740.00Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S3_MOUSE3.378e-2331.84Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN3.378e-2331.84Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
PHG1A_DICDI1.087e-2132.72Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S2_RAT2.677e-2031.68Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionC02009F04SK IF1 Citrus clementina cDNA clone C02009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289138 ID=CX289138; Name=CX289138; organism=Citrus clementina; type=EST; length=545bp
TTTCTGTGGTCCTCTGTTTCTGACATTCTGCTTCCTGAACACTGTTGCCA
TTGCTTACAATGCGACAGCAGCACTGCCATTTGGCACAATTGTGGTGATA
GTCCTCATATGGACATTAGTCACATCACCTCTACTTGTGTTGGGAGGTAT
TGCTGGTAAAAACAGCAAGGCAGAGTTCCAAGCTCCTTGTCGTACGACCA
AGTACCCTCGAGAGATCCCACCACTACCTTGGTATAGGAGTGCTATTCCT
CAGATGGCAATGGCAGGTTTCCTGCCATTTAGTGCCATCTACATTGAGCT
TTACTATATTTTTGCCAGTGTTTGGGGCCACAGGATTTACACAATATACA
GCATCCTCTTTATTGTCTTTATCATTCTGTTGATTGTTACTGCTTTCATA
ACTGTGGCTTTGACTTACTTCCAACTTGCTGCTGAAGATCATGAATGGTG
GTGGAGGTCATTTCTTTGTGGTGGATCTACTGGTGCTTTCATCTATGCGT
ACTGCTTGTACTACTACTATGCACGATCAGATATGTCAGGTTTTA
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