CX289140

Overview
NameCX289140
Unique NameCX289140
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289140 vs. ExPASy Swiss-Prot
Match: NAC78_ARATH (NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.207e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:    3 IGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDGTKPGQSAFVLCRLFKK 158
            +GMKKTLV+H GRAP+G+RTNWVMHEYR + +DL      Q A+VLCR+F+K
Sbjct:  108 VGMKKTLVYHKGRAPRGERTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQK 159          
BLAST of CX289140 vs. ExPASy Swiss-Prot
Match: NAC7_ARATH (NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.319e-11
Identity = 30/53 (56.60%), Postives = 44/53 (83.02%), Query Frame = 3
Query:    3 IGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQ 161
            IGM+KTLVF+ GRAP G++++W+MHEYR  TD+ +GT P +  +V+CR+FKK+
Sbjct:  107 IGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDE-NGT-PQEEGWVVCRVFKKR 157          
BLAST of CX289140 vs. ExPASy Swiss-Prot
Match: NAC76_ORYSJ (NAC domain-containing protein 76 OS=Oryza sativa subsp. japonica GN=NAC76 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 9.657e-11
Identity = 29/53 (54.72%), Postives = 42/53 (79.25%), Query Frame = 3
Query:    3 IGMKKTLVFHMGRAPKGKRTNWVMHEYRATTDDLDGTKPGQSAFVLCRLFKKQ 161
            IGM+KTLVF++GRAP GK+T+W+MHEYR   D++D  + G   +V+CR+F K+
Sbjct:  111 IGMRKTLVFYVGRAPHGKKTDWIMHEYRLDQDNVDVQEDG---WVVCRVFMKK 160          
The following BLAST results are available for this feature:
BLAST of CX289140 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NAC78_ARATH3.207e-1463.46NAC domain-containing protein 78 OS=Arabidopsis th... [more]
NAC7_ARATH3.319e-1156.60NAC domain-containing protein 7 OS=Arabidopsis tha... [more]
NAC76_ORYSJ9.657e-1154.72NAC domain-containing protein 76 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC02009F06SK IF1 Citrus clementina cDNA clone C02009F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289140 ID=CX289140; Name=CX289140; organism=Citrus clementina; type=EST; length=462bp
TAATTGGTATGAAGAAAACGCTTGTATTTCATATGGGTCGTGCTCCTAAA
GGTAAAAGGACCAATTGGGTCATGCACGAGTATCGAGCTACTACTGACGA
TCTTGATGGCACCAAACCCGGCCAAAGCGCTTTTGTACTTTGTCGTTTGT
TTAAGAAACAAGATGAGAGTGTTGAAATTTGTGTCGAAGTCAAACCCAGT
GAATCATCTCCTACTTCGGCCAGATCTGAGTTTGCGTTAGATCAAACATT
GCTGGACTGCAAACCTTCTGTTTCTCATTTGGCGGAGAAAGTAACATCTA
ATTTGCAAGAGTGTCAGACCAAAAGCTCGGAATTTACAGCTACTGAGATT
GATCAAGCCATGCAAGAAAACTTTGGTGATGTGTTTACTAAAGTGATGTC
GGAGCCACTAGATTGCACCCTGTTTCCTGCATTGCATTCGCCCTTTCCAG
TAGAGAAAGGAT
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