CX289160

Overview
NameCX289160
Unique NameCX289160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13432 contig Ccv1_Contig13432:1723..2322. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y2197_ARATH (Probable protein kinase At2g41970 OS=Arabidopsis thaliana GN=At2g41970 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.174e-43
Identity = 83/175 (47.43%), Postives = 119/175 (68.00%), Query Frame = 1
Query:    1 ERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLR 525
            +R K+A G A+ LE+LH      ++HRDV+SSN+LL DDF  +++DF L   +S +++ +  T V GTFGY APEY M G++  K DVY+FGVVLLELLTGRKP+ +  PKGQ+SLV WA P LS  KV Q +DP L N++    + ++   + LC++ +   RP M++V+K L+
Sbjct:  177 QRVKIAYGAAKGLEFLHEKVQPPIVHRDVRSSNVLLFDDFVAKMADFNLTNASSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCIDPKLNNDFPPKAVAKLAAVAALCVQYEADFRPNMTIVVKALQ 351          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.298e-42
Identity = 85/175 (48.57%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 ERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLR 525
            +R K+A+G A+ LEYLH  +   +IHRD+KSSNILL DD   +++DF L+  A   ++ +  T V GTFGY APEY M G+++ K DVY+FGVVLLELLTGRKP+ +  P+GQ+SLV WA P LS  KV Q +D  L  +Y    + +M   + LC++ +   RP MS+V+K L+
Sbjct:  171 QRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSEDKVKQCVDARLNTDYPPKAIAKMAAVAALCVQYEADFRPNMSIVVKALQ 345          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y2706_ARATH (Probable receptor-like protein kinase At2g47060 OS=Arabidopsis thaliana GN=At2g47060 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.037e-42
Identity = 84/175 (48.00%), Postives = 118/175 (67.43%), Query Frame = 1
Query:    1 ERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLR 525
            +R K+A+G A  LEYLH  +   +IHRD+KSSN+LL +D   +++DF L+  A   ++ +  T V GTFGY APEY M G++N K DVY+FGVVLLELLTGRKP+ +  P+GQ+SLV WA P LS  KV Q +D  LG +Y    + ++   + LC++ +   RP MS+V+K L+
Sbjct:  176 QRVKIAVGAARGLEYLHEKANPHIIHRDIKSSNVLLFEDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHRLPRGQQSLVTWATPKLSEDKVKQCVDARLGGDYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQ 350          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.083e-38
Identity = 77/176 (43.75%), Postives = 113/176 (64.20%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGD 531
            R K+  G A+AL YLH     +V+HRD+K+SNIL+ D+F  +LSDFGLAK   +  SHIT T V GTFGY+APEY   G +N+K D+Y+FGV+LLE +TGR P+    P  + +LV W K ++ + +  +++DP L        ++R +L S+ C+  +   RP+MS V ++L  D
Sbjct:  283 RMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAKLLDSGESHIT-TRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKMMVGTRRAEEVVDPRLEPRPSKSALKRALLVSLRCVDPEAEKRPRMSQVARMLESD 457          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.493e-36
Identity = 74/188 (39.36%), Postives = 117/188 (62.23%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVM--WAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGDADVTKWARLQ 561
            R ++A+G A  L YLH     ++IHRDVK++NILL ++FE  + DFGLAK      +H+T T V GT G++APEY   GK ++K DV+ +G++LLEL+TG++          + +++  W K +L   K+  L+DP L  NY+  ++E+++  ++LC +  P  RP+MS V+++L GD    KW   Q
Sbjct:  403 RKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVT-TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQTNYEERELEQVIQVALLCTQGSPMERPKMSEVVRMLEGDGLAEKWDEWQ 589          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 76/198 (38.38%), Postives = 118/198 (59.60%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGDADVTKWARLQVNASEESEMLDD 597
            R K+ +GVA  L YLH  S  +++HRD+K++N+LL     P++SDFGLAK     S+HI+ T +AGTFGY+APEY M G + DK DVY+FG+V LE++ GR             L+ W + +     + +L+DP LG+ Y+ ++   M+  +I+C   +P  RP MS V+K+L G   V      + +   E++ L++
Sbjct:  724 RRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDSTHIS-TRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVHGRSNKIERSKNNTFYLIDWVEVLREKNNLLELVDPRLGSEYNREEAMTMIQIAIMCTSSEPCERPSMSEVVKMLEGKKMVEVEKLEEASVHRETKRLEN 920          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 1.950e-36
Identity = 68/176 (38.64%), Postives = 116/176 (65.91%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGD 531
            R  + +G+A+ L YLH G   +V+HRD+KSSNILL   +  ++SDFGLAK   + SS++T T V GTFGY+APEY   G +N+K D+Y+FG++++E++TGR P+    P+G+ +LV W K ++ + +  +++DP +        ++R++L ++ C+  D   RP+M  ++ +L  +
Sbjct:  254 RMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSESSYVT-TRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLKSMVGNRRSEEVVDPKIPEPPSSKALKRVLLVALRCVDPDANKRPKMGHIIHMLEAE 428          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.326e-36
Identity = 71/180 (39.44%), Postives = 121/180 (67.22%), Query Frame = 1
Query:    1 ERYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGDADV 540
            +R+K+ +G AE + YLH  S  R+IHRD+K SNILL DDF P+++DFGLA+      +HI+ T +AGT GY+APEY + GK+ +K DVY+FGV+++E++TG++  +N   +   S++     +  +  V + +DP LG+N++  +  R++   +LC++     RP MS+V+K+++G  ++
Sbjct:  421 KRFKIILGTAEGMAYLHEESNLRIIHRDIKLSNILLEDDFTPRIADFGLARLFPEDKTHIS-TAIAGTLGYMAPEYVVRGKLTEKADVYSFGVLMIEVITGKR--NNAFVQDAGSILQSVWSLYRTSNVEEAVDPILGDNFNKIEASRLLQIGLLCVQAAFDQRPAMSVVVKMMKGSLEI 597          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.344e-36
Identity = 73/188 (38.83%), Postives = 117/188 (62.23%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVM--WAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLRGDADVTKWARLQ 561
            R ++A+G A  L YLH     ++IHRDVK++NILL ++FE  + DFGLA+      +H+T T V GT G++APEY   GK ++K DV+ +G++LLEL+TG++          + +++  W K +L   K+  L+DP L +NY   ++E+++  ++LC +  P  RP+MS V+++L GD    KW   Q
Sbjct:  406 RQQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLARLMDYKDTHVT-TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQSNYTEAEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGDGLAEKWDEWQ 592          
BLAST of CX289160 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.264e-35
Identity = 81/175 (46.29%), Postives = 115/175 (65.71%), Query Frame = 1
Query:    4 RYKVAMGVAEALEYLHSGSAQRVIHRDVKSSNILLSDDFEPQLSDFGLAK-WASTSSSHITCTDVAGTFGYLAPEYFMYGKVNDKIDVYAFGVVLLELLTGRKPISNDHPKGQESLVMWAKPILSSGKVTQLLDPALGNNYDYDQMERMVLASILCIRRDPRARPQMSLVLKLLR 525
            R KVA+  A+ L+YLH+GS  R+IHRDVKSSNILL  D   ++SDFGL+K +    +SHIT T V GT GYL PEY+   ++ +K DVY+FGVVLLEL+ GR+P+S+       +LV+WA+P L +G   +++D  L   +D   M++    +I C+ RD   RP ++ VL  L+
Sbjct:  706 RLKVAVDAAKGLDYLHNGSEPRIIHRDVKSSNILLDKDMNAKVSDFGLSKQFTKADASHIT-TVVKGTAGYLDPEYYSTLQLTEKSDVYSFGVVLLELICGREPLSHSGSPDSFNLVLWARPNLQAG-AFEIVDDILKETFDPASMKKAASIAIRCVGRDASGRPSIAEVLTKLK 878          
The following BLAST results are available for this feature:
BLAST of CX289160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 414
Match NameE-valueIdentityDescription
Y2197_ARATH8.174e-4347.43Probable protein kinase At2g41970 OS=Arabidopsis t... [more]
PTI1_SOLLC5.298e-4248.57Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]
Y2706_ARATH9.037e-4248.00Probable receptor-like protein kinase At2g47060 OS... [more]
Y2296_ARATH2.083e-3843.75Probable receptor-like protein kinase At2g42960 OS... [more]
SERK1_ARATH1.493e-3639.36Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y1534_ARATH1.950e-3638.38Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH1.950e-3638.64Probable serine/threonine-protein kinase At1g01540... [more]
CRK3_ARATH3.326e-3639.44Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
SERK2_ARATH4.344e-3638.83Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
Y5487_ARATH1.264e-3546.29Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC02009H03SK IF1 Citrus clementina cDNA clone C02009H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289160 ID=CX289160; Name=CX289160; organism=Citrus clementina; type=EST; length=600bp
GAGAGATATAAGGTGGCTATGGGGGTGGCCGAAGCTCTTGAATATCTCCA
CAGTGGCAGTGCTCAACGTGTGATCCACAGGGATGTTAAATCATCAAATA
TATTACTGTCAGATGACTTCGAGCCACAGCTATCTGATTTTGGACTTGCC
AAGTGGGCATCAACCTCCTCATCTCATATAACCTGCACCGATGTTGCGGG
AACCTTTGGCTACCTGGCTCCCGAGTACTTCATGTATGGAAAAGTAAATG
ACAAGATTGATGTCTATGCATTTGGTGTTGTACTCCTTGAGCTTCTCACT
GGAAGGAAGCCTATAAGCAACGATCATCCAAAAGGCCAAGAGAGCCTAGT
CATGTGGGCAAAGCCAATTCTGAGCAGTGGGAAGGTTACCCAGTTGTTAG
ATCCAGCCTTGGGCAACAACTATGACTATGACCAGATGGAGAGAATGGTT
TTAGCATCTATTCTCTGTATCAGGCGTGACCCTCGAGCTAGGCCTCAAAT
GAGCCTTGTTTTGAAGCTCCTCCGAGGTGATGCTGATGTGACCAAATGGG
CAAGGTTACAAGTTAATGCTTCAGAAGAATCTGAAATGCTGGATGATGAA
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