CX289163

Overview
NameCX289163
Unique NameCX289163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14378 contig Ccv1_Contig14378:130..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.744e-35
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 3
Query:   27 AQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            A AITCGQV+ SLAPCIG++RSGG +P  CCNG+R++N  ARTT DRQTACNCLK  A SI  +N NNAAGLPG CGV++PYKISTST+C+ V+
Sbjct:   22 AHAITCGQVTSSLAPCIGYVRSGGAVPPACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.339e-34
Identity = 65/102 (63.73%), Postives = 83/102 (81.37%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V+ P+ AQAITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV+IPY+IS ST+C+ V+
Sbjct:   17 MVVSVPI-AQAITCGQVSSNLAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34
Identity = 63/102 (61.76%), Postives = 83/102 (81.37%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V+ P+ AQA+TCGQVS +LAPCI ++R GG +P  CCNG+R++N  A+TT DRQTACNCLKQ + S+P +N NNAA LPG CGV++PYKIS ST+C+ V+
Sbjct:   17 MVVSVPI-AQALTCGQVSSNLAPCIAYVRGGGAVPPACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.668e-34
Identity = 67/91 (73.63%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   36 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            ITCGQVS SLAPCI +LR+GG +P  CCNGVRSLN AA+TT DRQ ACNCLK A  SI  LNLN AAGLPG CGVS+PYKIS STDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.266e-33
Identity = 64/101 (63.37%), Postives = 76/101 (75.25%), Query Frame = 3
Query:    6 LVTGPLSAQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            +V G    +A++CGQVS SLAPCI +L  GG +P  CC+GV+SLN+AA+TTPDRQ AC CLK A  SI  +N  NAA  PG CGVSIPYKIS STDCSKV+
Sbjct:   16 MVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 6.266e-33
Identity = 62/91 (68.13%), Postives = 75/91 (82.42%), Query Frame = 3
Query:   36 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            ITCGQVS SLAPCIG++R GG +P  CCNG+R++N  ARTTPDR+TACNCLKQ + SI  +N NNAA LPG CGV+IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.110e-32
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 3
Query:   36 ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            ITCGQVS +LAPCI ++R GG +P  CCNG+R++N  ARTTPDRQ ACNCLKQ + S+P +N NNAA LPG CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.438e-31
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 3
Query:    3 MLVTGPLSAQA-ITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            M+V GP+++ A ++CG VSG +APCIG+L   GP+P  CC GV +LN  ARTTPDRQ AC CL  AA S P+LN   AAGLP ACGV+IPYKIS ST+C+ VR
Sbjct:   15 MIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.491e-31
Identity = 62/103 (60.19%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 MLVTGPLSAQAITCGQVSGSLAPCIGFLRS--GGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKV 305
            +L T P +   +TCGQV+G+LAPC+G+LRS    P+P+ CCN VR LN AARTT D++TAC CLKQ A ++  LNLN AAGLP  CGV+IPYKIS +TDC++V
Sbjct:   17 VLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX289163 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.865e-31
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 3
Query:   27 AQAITCGQVSGSLAPCIGFLRSGGPIPMPCCNGVRSLNAAARTTPDRQTACNCLKQAARSIPSLNLNNAAGLPGACGVSIPYKISTSTDCSKVR 308
            A AITC QVS +LAPCI ++RSGG +P  CCNG++++N  A+TTPDRQ ACNCLK  A S+  +N  NA  LPG CGV++PYKISTST+C+ V+
Sbjct:   22 AHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
The following BLAST results are available for this feature:
BLAST of CX289163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MALDO8.744e-3569.15Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDU4.339e-3463.73Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV5.668e-3461.76Non-specific lipid-transfer protein OS=Prunus aviu... [more]
LTP1_MORNI5.668e-3473.63Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN6.266e-3363.37Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUAR6.266e-3368.13Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP1_PRUPE3.110e-3265.93Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_BRANA3.438e-3161.17Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP_DAUCA4.491e-3160.19Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_PYRCO5.865e-3160.64Non-specific lipid-transfer protein OS=Pyrus commu... [more]

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Properties
Property NameValue
Genbank descriptionC02009H06SK IF1 Citrus clementina cDNA clone C02009H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289163 ID=CX289163; Name=CX289163; organism=Citrus clementina; type=EST; length=491bp
GCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACATGTGGGCAG
GTGAGTGGCTCATTGGCACCATGCATCGGTTTCTTGAGATCGGGCGGCCC
TATACCTATGCCATGCTGCAACGGCGTCAGGTCTCTCAACGCTGCCGCCA
GAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAGCAAGCCGCC
AGATCAATCCCTAGCCTCAACCTTAATAATGCTGCTGGTCTTCCAGGAGC
TTGTGGAGTCAGCATTCCTTACAAGATCAGCACCTCCACTGACTGCTCTA
AGGTCAGGTGAACAGGAATCTGGGCCGTTGATTTTCAGGTTTAAGTTGAC
GGAGTAGAATAAATGTATAATAATAAGGACATTTTTGTGTCCGATTTATG
AGTCTCTCTCTACACTTTGTACTGCGAGTCTCGTTCGCGCCCTCGTTTCA
TGTTATGTTTTATTGTCTTTGCTTTTCATGTCATCGTCAGT
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