CX289186
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 3.041e-62 Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 2 Query: 2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 487 FGEEK+KF +SQKIS EHKIKLSGN+PA ++CYD+LVDVPFP+++++ LAN EKNKEI+ACDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRN E+E RSDFFNQPWVEDAVIRY+NR+ +AG+D GS Sbjct: 371 FGEEKLKFTMVSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2) HSP 1 Score: 101.293 bits (251), Expect = 2.605e-21 Identity = 51/145 (35.17%), Postives = 89/145 (61.38%), Query Frame = 2 Query: 14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 448 ++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL + +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++ D + NPE+E R++F++QPW ++AV RY Sbjct: 319 RLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.605e-21 Identity = 51/145 (35.17%), Postives = 89/145 (61.38%), Query Frame = 2 Query: 14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 448 ++KF+ I Q+++ H I + + T+CYD+ V+V PL+ +M++FL + +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++ D + NPE+E R++F++QPW ++AV RY Sbjct: 319 RLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19 Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2 Query: 14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 +++F+ I K++ H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19 Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2 Query: 14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 +++F+ I K++ H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19 Identity = 51/149 (34.23%), Postives = 86/149 (57.72%), Query Frame = 2 Query: 14 KIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 +++F+ I K++ H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 292 RLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19 Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2 Query: 2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 F +++KF+ I Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D NPE+E R++F+ QPW ++AV RY K Sbjct: 347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.094e-19 Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2 Query: 2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 F +++KF+ I Q++ H I + N T+CYD+ V+V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D NPE+E R++F+ QPW ++AV RY K Sbjct: 347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.695e-18 Identity = 50/153 (32.68%), Postives = 83/153 (54.25%), Query Frame = 2 Query: 2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 460 F +++KF+ I Q++ H I + N T+CYD+ +V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK++ D N E+E R++F+ QPW ++AV RY K Sbjct: 347 FESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX289186 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.453e-13 Identity = 39/151 (25.83%), Postives = 78/151 (51.66%), Query Frame = 2 Query: 2 FGEEKIKFATISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMN 454 F +++ F I + +++ + I +S ++ + +D+ ++ P ++ +FLA M +I + D+ + I+ I + + F FS+SP EFIN I SQS+DL++V + N ++ +D++ QPWV ++ Y+N Sbjct: 258 FEADRLYFPRIPELMNRFLEPIDPIVIPYTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408 The following BLAST results are available for this feature:
BLAST of CX289186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289186 ID=CX289186; Name=CX289186; organism=Citrus clementina; type=EST; length=501bpback to top |