CX289190

Overview
NameCX289190
Unique NameCX289190
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289190 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 72/194 (37.11%), Postives = 104/194 (53.61%), Query Frame = 3
Query:    9 PISLVSQTATKYKKLFSYCLPS-SASSTGHLTFGPGASKSVQFTPLSSISGGS---SFYGLEMIGISVGGQKLSIAASVFT-----TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDF-SKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISHVCLAFAGNSDPTDVSIFGNTQQ 560
            P+SL SQ        FSYC+ S  +SS   L  G  AS   + +P +++   S   ++Y + + GI+VGG  L I +S F      T G IIDSGT +T LP DAY  +  AF   ++      + S L TC+   S  STV +P+IS+ F GGV +++ +  I+ +     +CLA  G+S    +SIFGN QQ
Sbjct:  226 PLSLPSQLGVGQ---FSYCMTSYGSSSPSTLALGSAASGVPEGSPSTTLIHSSLNPTYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLSTCFQQPSDGSTVQVPEISMQFDGGV-LNLGEQNILISPAEGVICLAM-GSSSQLGISIFGNIQQ 414          
BLAST of CX289190 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.985e-12
Identity = 62/201 (30.85%), Postives = 96/201 (47.76%), Query Frame = 3
Query:    3 RDPISLVSQT-ATKYKKLFSYCL-PSSASSTGHLTFGPGASKSVQFTPLSSISGGS---SFYGLEMIGISVGGQKLSIAASVFT------TAGTIIDSGTVITRLPPDAYTPLRTAFRQFMSKYPTAPALSLLDTCYDF-SKYSTVTLPQISLFFSGGVEVSVDKTGIMYASNISHVCLAFAGNSDPTDVSIFGNTQQHTL 569
            R P+SL SQ   TK    FSYC+ P  +S+  +L  G  A+     +P +++   S   +FY + + G+SVG  +L I  S F       T G IIDSGT +T    +AY  +R  F   ++      + S  D C+   S  S + +P   + F GG ++ +       + +   +CLA   +S    +SIFGN QQ  +
Sbjct:  223 RGPLSLPSQLDVTK----FSYCMTPIGSSTPSNLLLGSLANSVTAGSPNTTLIQSSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQINLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGG-DLELPSENYFISPSNGLICLAMGSSSQ--GMSIFGNIQQQNM 416          
The following BLAST results are available for this feature:
BLAST of CX289190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP2_NEPGR1.132e-1937.11Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
NEP1_NEPGR2.985e-1230.85Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionC02010C01SK IF1 Citrus clementina cDNA clone C02010C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289190 ID=CX289190; Name=CX289190; organism=Citrus clementina; type=EST; length=569bp
GCCGTGACCCAATCTCACTAGTTTCCCAAACAGCCACAAAATACAAGAAA
CTCTTCTCATATTGCCTCCCTTCGTCCGCCAGCTCAACCGGTCACCTCAC
TTTCGGCCCCGGCGCATCAAAGTCCGTTCAGTTCACCCCACTCTCCTCAA
TTTCTGGAGGATCATCATTCTACGGCCTTGAAATGATTGGAATCAGCGTT
GGCGGCCAAAAACTATCCATTGCCGCGTCAGTTTTCACTACAGCCGGTAC
AATTATAGACTCCGGAACTGTCATCACACGTCTGCCTCCGGATGCATACA
CCCCTCTGCGGACAGCATTCCGTCAGTTTATGTCCAAGTATCCGACTGCG
CCCGCGCTGTCGCTTCTTGACACATGTTATGATTTTAGTAAGTATAGTAC
TGTCACTCTCCCTCAGATAAGCTTGTTCTTCAGTGGAGGTGTGGAGGTGA
GTGTTGATAAGACAGGGATTATGTACGCGAGTAATATATCTCACGTTTGT
TTGGCGTTTGCGGGGAATAGTGATCCGACAGATGTGAGCATTTTCGGAAA
TACGCAGCAACATACCTTG
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