CX289226

Overview
NameCX289226
Unique NameCX289226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: SNWA_DICDI (Protein snwA OS=Dictyostelium discoideum GN=snwA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.011e-16
Identity = 45/79 (56.96%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  157 AMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPK 393
            A GKKSK  RD+DRDISEK ALG AS    R  + +YDQRLFNQ + + SGF  DD YNVY K LF    + +++YRPK
Sbjct:  539 ASGKKSKFNRDQDRDISEKIALGQASI--KRTEDSIYDQRLFNQSESLTSGFGNDDSYNVYSKPLFGGAVS-NSIYRPK 614          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: BX42_DROME (Puff-specific protein Bx42 OS=Drosophila melanogaster GN=Bx42 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.223e-15
Identity = 40/81 (49.38%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  154 AAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            AA  K+SK+ ++R+RDISE+ ALG+ +  A  G E ++DQRLFN  KGMDSG+  D+ YNVYDK    +    + +YRP K
Sbjct:  382 AAPEKRSKLQKERERDISEQIALGLPAKSAGNG-ETLFDQRLFNTTKGMDSGYGDDEAYNVYDKPWRDSNTLGAHIYRPSK 461          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: SNW1_PONAB (SNW domain-containing protein 1 OS=Pongo abelii GN=SNW1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  154 AAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            AA  K+SK+ R+ +RDISE  ALG+ +   +   EV YDQRLFNQ KGMDSGFA   D+ YNVYD+     +    ++YRP K
Sbjct:  372 AAPDKRSKLQRNENRDISEVIALGVPNPRTSN--EVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSK 452          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: SNW1_MOUSE (SNW domain-containing protein 1 OS=Mus musculus GN=Snw1 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  154 AAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            AA  K+SK+ R+ +RDISE  ALG+ +   +   EV YDQRLFNQ KGMDSGFA   D+ YNVYD+     +    ++YRP K
Sbjct:  372 AAPDKRSKLQRNENRDISEVIALGVPNPRTSN--EVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSK 452          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: SNW1_HUMAN (SNW domain-containing protein 1 OS=Homo sapiens GN=SNW1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  154 AAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            AA  K+SK+ R+ +RDISE  ALG+ +   +   EV YDQRLFNQ KGMDSGFA   D+ YNVYD+     +    ++YRP K
Sbjct:  372 AAPDKRSKLQRNENRDISEVIALGVPNPRTSN--EVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQSIYRPSK 452          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: SNW1_BOVIN (SNW domain-containing protein 1 OS=Bos taurus GN=SNW1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.151e-14
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  154 AAMGKKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFA--TDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            AA  K+SK+ R+ +RDISE  ALG+ +   +   EV YDQRLFNQ KGMDSGFA   D+ YNVYD+     +     +YRP K
Sbjct:  372 AAPDKRSKLQRNENRDISEVIALGVPNPRTSN--EVQYDQRLFNQSKGMDSGFAGGEDEIYNVYDQAWRGGKDMAQNIYRPSK 452          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: YGH1_CAEEL (Uncharacterized protein T27F2.1 OS=Caenorhabditis elegans GN=T27F2.1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 1
Query:  166 KKSKITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPKK 396
            K  K+ ++R+RDISEK  LG+  T   R GE  +DQRLF++ +G+DSG   DD YN YD            +YRP K
Sbjct:  379 KADKLRKERERDISEKIVLGLPDTNQKRTGEPQFDQRLFDKTQGLDSGAMDDDTYNPYDAAWRGGDSVQQHVYRPSK 455          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: PRP45_EMENI (Pre-mRNA-processing protein 45 OS=Emericella nidulans GN=prp45 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  148 KDAAMGKKSKI---TRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPK 393
            + + MG + +I    R+++RDISEK ALG+A     +  E M+D RLFNQ  G+ +GF  D   N YDK LF AQ  ++++YRPK
Sbjct:  405 RQSRMGTERRIQAMAREQNRDISEKVALGLAKP--TQSSETMWDSRLFNQTSGLSTGFNED---NPYDKPLFAAQDAINSIYRPK 484          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: PRP45_ASPFU (Pre-mRNA-processing protein 45 OS=Aspergillus fumigatus GN=prp45 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.491e-11
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  148 KDAAMGKKSKI---TRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRPK 393
            + + MG + +I    R+++RDISEK ALG+A     +  E M+D RLFNQ  G+ SGF  D   N YDK LF AQ  ++++YRP+
Sbjct:  405 RQSRMGTERRIQMMAREQNRDISEKVALGLAKP--TQTSESMWDSRLFNQTSGLQSGFNED---NPYDKPLFAAQDAINSIYRPR 484          
BLAST of CX289226 vs. ExPASy Swiss-Prot
Match: PRP45_CRYNE (Pre-mRNA-processing protein 45 OS=Cryptococcus neoformans GN=PRP45 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.543e-11
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 1
Query:  178 ITRDRDRDISEKFALGMASTGAARGGEVMYDQRLFNQEKGMDSGFATDDQYNVYDKGLFTAQPTLSTLYRP 390
            + ++ +RDISEK ALG+A   A++  E + D RLFN+E  + +GFA++D YN+YDK LF      + +YRP
Sbjct:  430 LAKEANRDISEKIALGLAKPSASK--ETLLDSRLFNRE-ALSTGFASEDSYNLYDKPLFAGSSAAAAIYRP 497          
The following BLAST results are available for this feature:
BLAST of CX289226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
SNWA_DICDI2.011e-1656.96Protein snwA OS=Dictyostelium discoideum GN=snwA P... [more]
BX42_DROME2.223e-1549.38Puff-specific protein Bx42 OS=Drosophila melanogas... [more]
SNW1_PONAB5.475e-1450.60SNW domain-containing protein 1 OS=Pongo abelii GN... [more]
SNW1_MOUSE5.475e-1450.60SNW domain-containing protein 1 OS=Mus musculus GN... [more]
SNW1_HUMAN5.475e-1450.60SNW domain-containing protein 1 OS=Homo sapiens GN... [more]
SNW1_BOVIN7.151e-1450.60SNW domain-containing protein 1 OS=Bos taurus GN=S... [more]
YGH1_CAEEL1.349e-1244.16Uncharacterized protein T27F2.1 OS=Caenorhabditis ... [more]
PRP45_EMENI5.125e-1244.71Pre-mRNA-processing protein 45 OS=Emericella nidul... [more]
PRP45_ASPFU1.491e-1144.71Pre-mRNA-processing protein 45 OS=Aspergillus fumi... [more]
PRP45_CRYNE2.543e-1145.07Pre-mRNA-processing protein 45 OS=Cryptococcus neo... [more]

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Properties
Property NameValue
Genbank descriptionC02010F03SK IF1 Citrus clementina cDNA clone C02010F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289226 ID=CX289226; Name=CX289226; organism=Citrus clementina; type=EST; length=397bp
AGAGAGGAGTATGAGCATGAGAGAGATAGAGGGAGAGAGAGGGATATGCC
GAAGGAGACAAGGGAGGAGAGGGAAGAGAGGTTGCAGAGGGAGAAACTAC
GTGCGGAGAGACGTCGGGAGAGGGAAAGGGAGAGAAGGTTGGAGGCCAAG
GATGCTGCTATGGGAAAGAAGAGTAAGATTACTAGAGACAGAGATCGTGA
TATTAGTGAGAAATTTGCTCTTGGCATGGCCTCGACTGGGGCGGCAAGAG
GAGGTGAGGTTATGTATGATCAAAGGCTGTTCAACCAGGAGAAAGGAATG
GATTCTGGTTTTGCCACTGATGACCAGTACAATGTGTATGACAAGGGCCT
GTTTACTGCTCAGCCCACACTTTCAACCCTATATAGGCCCAAGAAAG
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