CX289233

Overview
NameCX289233
Unique NameCX289233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length392
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289233 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 57/127 (44.88%), Postives = 89/127 (70.08%), Query Frame = 2 
Query:    2 ELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR--HRPESSEGTSE-KKSNPTEDMKSLDTKTTMSITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRHLQMMFEQRKQ 373
            ELHE FV+AV +LGG ++ATPK ++++M V+ LT+YH+KSHLQK+R  +  H+      T E  +++  +  +++ + + M       +QMEVQ+RLHEQLE+QR+LQLRIE QG+++Q + E+  Q
Sbjct:   42 ELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQ 168
[Close]
BLAST of CX289233 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 36/66 (54.55%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:    2 ELHEAFVEAVNRLGGGERATPKGVLKLMNVENLTIYHVKSHLQKYRTAR----HRPESSEGTSEKK 187
            ELH +FV AV+ LGG  +ATPK VLK+M+V+ LTI HVKSHLQ YR +R     +PE S   S ++
Sbjct:   31 ELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRR 96
The following BLAST results are available for this feature:
BLAST of CX289233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH1.072e-2544.88Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH1.963e-1154.55Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionC02010F11SK IF1 Citrus clementina cDNA clone C02010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289233 ID=CX289233; Name=CX289233; organism=Citrus clementina; type=EST; length=392bp
AGAACTTCATGAGGCATTTGTGGAGGCTGTCAATCGGCTGGGTGGCGGTG
AACGAGCTACTCCAAAAGGTGTCTTAAAGCTCATGAATGTTGAAAATCTG
ACCATTTATCATGTTAAAAGCCACCTCCAGAAATATAGAACAGCTAGACA
CAGACCAGAGTCTTCAGAAGGAACATCAGAGAAAAAATCGAATCCTACCG
AAGATATGAAATCTCTGGACACGAAAACGACTATGAGCATCACTGAAGCA
TTGCGATTGCAGATGGAAGTTCAAAAGCGACTTCATGAACAACTTGAGAT
TCAGAGAAATTTGCAGTTGCGTATAGAAGAACAGGGAAGACATCTTCAGA
TGATGTTTGAGCAACGAAAACAGATGGAGAACGAAAAGTCCA
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