CX289247

Overview
NameCX289247
Unique NameCX289247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length426
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.895e-23
Identity = 52/99 (52.53%), Postives = 69/99 (69.70%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSK-GLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYV 296
            INDG +GS+  V  D A    TPL   S+ +    G ++T+ STVFGPTCDA D V   ++LPEL+VNDWL+F  MGAYT A G+NFNG++T+AI T++
Sbjct:  327 INDGLYGSMNCVLYDHATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLPELQVNDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHL 425          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 6.644e-23
Identity = 52/99 (52.53%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSK-GLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYV 296
            INDG +GS+  V  D A    TPL   S+      G ++T+ STVFGPTCDA D V   ++LPEL+VNDWL+F  MGAYT A G+NFNG++T+AI T++
Sbjct:  327 INDGLYGSMNCVLYDHATVTATPLACMSNRNNLNCGGSKTFPSTVFGPTCDALDTVLRDYQLPELQVNDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHL 425          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 47/99 (47.47%), Postives = 66/99 (66.67%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASS-FTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYV 296
            INDG +GS+  V  D A    TPL   S+    +   ++ + ST+FGPTCDA D V   + +PEL+VNDW++F  MGAYT A G+NFNG++T+AI T++
Sbjct:  331 INDGLYGSMNCVLYDHATVTATPLACMSNRVNLNCSGSKMFPSTIFGPTCDALDTVLRDYHVPELQVNDWVIFPNMGAYTKAAGSNFNGFNTSAIVTHL 429          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.531e-14
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNG-------YSTAAIPTYVVR 302
            +NDG +GS   +  D A+ +  PLP        K     Y S+V+GPTCD  D++   + LPE++V +WL+F +MGAYT    ++FNG       Y  + +P +VVR
Sbjct:  316 VNDGVYGSFNCILYDHAVVR--PLPQREPIPNEK----LYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGAYTVVGTSSFNGFQSPTIYYVVSGLPDHVVR 416          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR1_XENLA (Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc1-A PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.063e-12
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYVVRSNQTLL 320
            +NDG +GS   +  D A  K    P  +     K   + Y+S+++GPTCD  D +    +LPEL+V DW++F  MGAYT A  + FNG+    +   + R +  L+
Sbjct:  319 VNDGVYGSFNCILFDHAHVK----PVLTK--KPKPDEKFYSSSIWGPTCDGLDRIVERFELPELQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVMSRPHWQLM 418          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_BOVIN (Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.814e-12
Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYVVRSNQT 314
            +NDG +GS   +  D A  K    P        K   + Y+S+++GPTCD  D +     LPE+ V DW++F  MGAYT A  + FNG+    I  Y V S  T
Sbjct:  318 VNDGVYGSFNCILYDHAHVK----PLLQK--RPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPTI--YYVMSGPT 413          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_CAEEL (Ornithine decarboxylase OS=Caenorhabditis elegans GN=odc-1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 2.369e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYVV 299
            INDG +GS   +  D A    +PL     F T +     + ST++GPTCD+ D V     +P++ V +WL + +MGAYT A  T FNG+S   +P YV+
Sbjct:  318 INDGVYGSFNCILFDHAHPIGSPL-----FDTDRN--EKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGAYTLAAATTFNGFS-KPVPMYVM 408          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_RAT (Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAIPTYVVRSNQTLL 320
            +NDG +GS   +  D A  K      A      K   + Y+S+++GPTCD  D +     LPE+ V DW++F  MGAYT A  + FNG+    I   + RS   L+
Sbjct:  318 VNDGVYGSFNCILYDHAHVK------ALLQKRPKPDEKYYSSSIWGPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPNIYYVMSRSMWQLM 417          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR2_XENLA (Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc1-B PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.093e-12
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAI 284
            +NDG +GS   +  D A     P P      +       Y S+++GPTCD  D++    +LPEL V DWL+F  MGAYT A  +NFNG+  + +
Sbjct:  315 VNDGVYGSFNCLVFDHA----HPKPILHKKPSPD--QPLYTSSLWGPTCDGLDQIAERVQLPELHVGDWLLFENMGAYTIAASSNFNGFQQSPV 402          
BLAST of CX289247 vs. ExPASy Swiss-Prot
Match: DCOR_CRIGR (Ornithine decarboxylase OS=Cricetulus griseus GN=ODC1 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 4.040e-12
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 3
Query:    3 INDGKFGSLAWVTCDEAIAKCTPLPFASSFTTSKGLTRTYNSTVFGPTCDAFDEVFTGHKLPELEVNDWLVFSEMGAYTTACGTNFNGYSTAAI 284
            +NDG +GS   +  D A  K   LP        K   + Y+S+++GPTCD  D +     LPE+ V DW++F  MGAYT A  + FNG+   +I
Sbjct:  312 VNDGVYGSFNCILYDHAHVKPL-LP-----KRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVAAASTFNGFQRPSI 399          
The following BLAST results are available for this feature:
BLAST of CX289247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DCOR_DATST3.895e-2352.53Ornithine decarboxylase OS=Datura stramonium PE=2 ... [more]
DCOR_SOLLC6.644e-2352.53Ornithine decarboxylase OS=Solanum lycopersicum GN... [more]
DCOR_CAPAN1.385e-2047.47Ornithine decarboxylase OS=Capsicum annuum GN=ODC ... [more]
DCOR_TRYBB2.531e-1437.38Ornithine decarboxylase OS=Trypanosoma brucei bruc... [more]
DCOR1_XENLA1.063e-1234.91Ornithine decarboxylase 1 OS=Xenopus laevis GN=odc... [more]
DCOR_BOVIN1.814e-1237.50Ornithine decarboxylase OS=Bos taurus GN=ODC1 PE=2... [more]
DCOR_CAEEL2.369e-1239.39Ornithine decarboxylase OS=Caenorhabditis elegans ... [more]
DCOR_RAT3.093e-1235.85Ornithine decarboxylase OS=Rattus norvegicus GN=Od... [more]
DCOR2_XENLA3.093e-1238.30Ornithine decarboxylase 2 OS=Xenopus laevis GN=odc... [more]
DCOR_CRIGR4.040e-1238.30Ornithine decarboxylase OS=Cricetulus griseus GN=O... [more]

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Properties
Property NameValue
Genbank descriptionC02010H01SK IF1 Citrus clementina cDNA clone C02010H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289247 ID=CX289247; Name=CX289247; organism=Citrus clementina; type=EST; length=426bp
GGATTAACGACGGGAAGTTCGGGTCACTTGCTTGGGTAACCTGCGATGAA
GCAATTGCTAAGTGCACCCCGCTACCTTTTGCTTCCAGCTTTACTACGAG
CAAGGGGCTGACGAGGACTTACAATTCAACGGTATTCGGACCAACATGTG
ATGCATTCGATGAGGTGTTTACAGGTCACAAGTTGCCGGAACTTGAGGTG
AACGACTGGCTTGTGTTTTCCGAAATGGGTGCCTATACGACGGCTTGTGG
AACCAATTTCAATGGATATAGCACTGCTGCCATTCCAACTTACGTTGTCC
GCTCAAATCAAACCTTGCTAGCTATATAAAATGCATGTGATCACCGATGA
TATCCGTTTGCTGGTTAATTTTATTTATATGAAAACTGTAACGTCCAGGA
AATAATCCAGCTTTTCCAATCATTAA
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