CX289252

Overview
NameCX289252
Unique NameCX289252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL3_ARATH (Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 7.591e-56
Identity = 103/139 (74.10%), Postives = 110/139 (79.14%), Query Frame = 2
Query:    2 NTIRWRKEFXXXXXXXXXXXXXXXKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            NTI+WRKEF               K VFMHG D+EGHPVCYNVYGEFQNKELY KTFSDEEKR+ FLR RIQFLERSIRKLDF  GG+STI QVND+KNSPG  K ELR ATKQA++LLQDNYPEFV KQ FINVPWWY
Sbjct:  187 NTIKWRKEFKIDELVEEDLVDDLDKVVFMHGHDREGHPVCYNVYGEFQNKELYNKTFSDEEKRKHFLRTRIQFLERSIRKLDFSSGGVSTIFQVNDMKNSPGLGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWY 325          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL5_ARATH (Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 3.767e-55
Identity = 100/138 (72.46%), Postives = 110/138 (79.71%), Query Frame = 2
Query:    5 TIRWRKEFXXXXXXXXXXXXXXXKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            T++WR +F               K VFM G DKE HPVCYNVYGEFQNK+LYQKTFSDEEKR++FLRWRIQFLE+SIR LDF  GG+STI QVNDLKNSPGP K ELR ATKQAL LLQDNYPEFV+KQ+FINVPWWY
Sbjct:  363 TLQWRIDFNIEELLDENLGDDLDKVVFMQGQDKENHPVCYNVYGEFQNKDLYQKTFSDEEKRERFLRWRIQFLEKSIRNLDFVAGGVSTICQVNDLKNSPGPGKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWY 500          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL6_ARATH (Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 72/139 (51.80%), Postives = 94/139 (67.63%), Query Frame = 2
Query:    8 IRWRKEFXXXXXXXXXXXXXXX--KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            + WR+EF                 K  +M G+DKEGHPVCYN YG F+ KE+Y++ F DEEK  KFLRWR+Q LER ++ L F+PGG+++I+QV DLK+ P   K ELR A+ Q L L QDNYPE VA ++FINVPW++
Sbjct:  107 LEWREEFKAEKLTEEDLGFKDLEGKVAYMRGYDKEGHPVCYNAYGVFKEKEMYERVFGDEEKLNKFLRWRVQVLERGVKMLHFKPGGVNSIIQVTDLKDMP---KRELRVASNQILSLFQDNYPELVATKIFINVPWYF 242          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL2_ARATH (Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.149e-34
Identity = 72/140 (51.43%), Postives = 92/140 (65.71%), Query Frame = 2
Query:    2 NTIRWRKEFXXXXXXXXXXXXXXX-KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            NT++WRKE                 K VF HG DK+GH V Y+ YGEFQNKE+    FSD+EK  KFL+WRIQF E+ +R LDF P   S+ V V+D +N+PG  +  L Q  K+A++  +DNYPEFVAK++FINVPWWY
Sbjct:  388 NTVQWRKENKIDDLVSEDLEGSEFEKLVFTHGVDKQGHVVIYSSYGEFQNKEI----FSDKEKLSKFLKWRIQFQEKCVRSLDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVAKELFINVPWWY 523          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL4_ARATH (Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 61/138 (44.20%), Postives = 94/138 (68.12%), Query Frame = 2
Query:    5 TIRWRKEFXXXXXXXXXXXXXXXKTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            T++WRK+                   +M+G D+E HPVCYNV+ E    ELYQ T   E+ R+KFLRWR Q +E+ I+KL+ +PGG+++++Q++DLKN+PG ++ E+    K+ ++ LQDNYPEFV++ +FINVP+W+
Sbjct:  244 TLKWRKQNKIDSILGEEFGEDLATAAYMNGVDRESHPVCYNVHSE----ELYQ-TIGSEKNREKFLRWRFQLMEKGIQKLNLKPGGVTSLLQIHDLKNAPGVSRTEIWVGIKKVIETLQDNYPEFVSRNIFINVPFWF 376          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: PATL1_ARATH (Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 5.852e-32
Identity = 71/141 (50.35%), Postives = 89/141 (63.12%), Query Frame = 2
Query:    2 NTIRWRKEFXXXXXXXXXXXXXXX-KTVFMHGFDKEGHPVCYNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDF-RPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWY 418
            NT++WRKE                 K VF HG DKEGH V Y+ YGEFQNKEL    FSD+EK  KFL WRIQ  E+ +R +DF  P   S+ V V+D +N+PG  K  L Q  ++A++  +DNYPEF AK++FINVPWWY
Sbjct:  279 NTVQWRKENKIDELVESGEEVSEFEKMVFAHGVDKEGHVVIYSSYGEFQNKEL----FSDKEKLNKFLSWRIQLQEKCVRAIDFSNPEAKSSFVFVSDFRNAPGLGKRALWQFIRRAVKQFEDNYPEFAAKELFINVPWWY 415          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: SFH5_PICGU (Phosphatidylinositol transfer protein SFH5 OS=Pichia guilliermondii GN=SFH5 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.214e-14
Identity = 50/151 (33.11%), Postives = 79/151 (52.32%), Query Frame = 2
Query:    2 NTIRWRKEFXXXXXXXXXXXXXXXKTVFM----HGFDKEGHPVCYNVYGEFQN-KELYQKTFSDEEKRQK----FLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKN------SPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVP 409
            NT +WRK+F                 + +     G ++  H V +N+YG  ++ K+L+QK F  ++K +K    FLRWRI  +ER++  +DF     S I QV+D  N       PG     ++ ATK+ +++  DNYPE ++ + FINVP
Sbjct:  111 NTFKWRKKFQPLSAAYSETFDKELDDLGVITKYDGTNENLHVVTWNLYGNLKSPKKLFQK-FGQDDKAEKEGSPFLRWRIGLMERALSLIDFTDKSNSKIAQVHDYNNVSMFRMDPG-----MKAATKEIIKIFGDNYPELLSTKFFINVP 255          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: SFH5_PICST (Phosphatidylinositol transfer protein SFH5 OS=Pichia stipitis GN=SFH5 PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  116 VCYNVYGEFQNKELYQK------TFSDEEKRQKFLRWRIQFLERSIRKLDFRPGGISTIVQVNDLKN-SPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVP 409
            V +N YG    K+L+++      T +++    +FLRWRI  +E+S++ +DF     + I QV+D  N S       +R ATK+ +++  DNYPE ++ + FINVP
Sbjct:  137 VTWNFYGATTPKKLFEEYGDNAGTTTNQRPGSQFLRWRIGLMEKSLQLVDFTDPKNNKIAQVHDYNNVSMFKVDKGMRAATKEIIKIFGDNYPELLSTKFFINVP 241          
BLAST of CX289252 vs. ExPASy Swiss-Prot
Match: SFH5_YARLI (Phosphatidylinositol transfer protein SFH5 OS=Yarrowia lipolytica GN=SFH5 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 44/140 (31.43%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    2 NTIRWRKEFXXXXXXXXXXXXXXXKTVFMHGFDKEGHPVC--YNVYGEFQNKELYQKTFSDEEKRQKFLRWRIQFLERSIRKLDF-RPGGISTIVQVNDLKN-SPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVP 409
            + ++WRKEF               K   +      G P    +N+YG   N++   + F D    + FLRWR+  +ERS+  LDF +PG  S ++Q++D KN S      E + A+K+ +++ Q  YPE + ++ F+NVP
Sbjct:   82 DALKWRKEFDPLDCASAKHDSKFDKLGVITDKGAGGEPQVTNWNLYGAVSNRK---EIFGD---LKGFLRWRVGIMERSLALLDFTKPGAGSMLLQIHDYKNVSFLRLDAETKAASKETIRVFQSYYPETLERKFFVNVP 215          
The following BLAST results are available for this feature:
BLAST of CX289252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PATL3_ARATH7.591e-5674.10Patellin-3 OS=Arabidopsis thaliana GN=PATL3 PE=1 S... [more]
PATL5_ARATH3.767e-5572.46Patellin-5 OS=Arabidopsis thaliana GN=PATL5 PE=1 S... [more]
PATL6_ARATH4.184e-3851.80Patellin-6 OS=Arabidopsis thaliana GN=PATL6 PE=2 S... [more]
PATL2_ARATH2.149e-3451.43Patellin-2 OS=Arabidopsis thaliana GN=PATL2 PE=1 S... [more]
PATL4_ARATH6.913e-3344.20Patellin-4 OS=Arabidopsis thaliana GN=PATL4 PE=1 S... [more]
PATL1_ARATH5.852e-3250.35Patellin-1 OS=Arabidopsis thaliana GN=PATL1 PE=1 S... [more]
SFH5_PICGU4.214e-1433.11Phosphatidylinositol transfer protein SFH5 OS=Pich... [more]
SFH5_PICST5.695e-1135.24Phosphatidylinositol transfer protein SFH5 OS=Pich... [more]
SFH5_YARLI7.438e-1131.43Phosphatidylinositol transfer protein SFH5 OS=Yarr... [more]
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Properties
Property NameValue
Genbank descriptionC02010H06SK IF1 Citrus clementina cDNA clone C02010H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289252 ID=CX289252; Name=CX289252; organism=Citrus clementina; type=EST; length=420bp
GAACACAATTCGATGGAGAAAGGAATTCGGCATTGATGATTTGATTGGGC
AAGACTTGGGTGACGATTTGGACAAAACGGTGTTCATGCACGGATTTGAC
AAAGAAGGGCACCCTGTTTGCTACAATGTGTACGGGGAGTTTCAGAACAA
GGAGCTTTATCAGAAAACGTTTTCTGACGAAGAGAAGAGGCAGAAATTCC
TGAGGTGGCGAATTCAATTCCTGGAAAGGAGCATCAGGAAATTGGATTTC
AGGCCCGGTGGTATTTCTACTATTGTCCAGGTCAATGACTTGAAGAATTC
TCCAGGACCTGCTAAGTGGGAGCTTAGACAAGCTACCAAACAGGCCCTTC
AGTTGCTCCAGGACAATTACCCTGAGTTTGTTGCTAAACAGGTGTTTATC
AATGTACCATGGTGGTACCT
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