CX289300

Overview
NameCX289300
Unique NameCX289300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length565
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A2_HUMAN (Multidrug and toxin extrusion protein 2 OS=Homo sapiens GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 62/181 (34.25%), Postives = 99/181 (54.70%), Query Frame = -2
Query:    1 AVLHPIRAFLRT------QGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 525
            ++LHP  + L        Q +T P  ++ V    ++   NY L   LNLG++G A A   + F   + L++Y+++ K  L+ W G++     Q WGP   LAVPS + +C+EWW YEI  FL GLLS  +  ++A  ++ +   + Y+ P  LS  +  RVG ALGA    +A+ +A+ G+
Sbjct:  195 SILHPSHSHLSRASFHLFQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSS-QCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVD--LSAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGV 372          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_RABIT (Multidrug and toxin extrusion protein 1 OS=Oryctolagus cuniculus GN=SLC47A1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.357e-24
Identity = 62/187 (33.16%), Postives = 98/187 (52.41%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y+   IP L A  +      +L  QG+  P  +  V A +++   NY+    L+LG+ G ALA     F L L L +Y++ SK     W G++ L   Q W     LA+PS + +C+EWW YEI  FL G+L   E  + A  +  +   ++Y+ P  LS ++  RVG+ALGAG   +A+ ++ + +
Sbjct:  156 YVTIFIPALPATFLYTLQVKYLLNQGIVLPQVVTGVAANLVNALANYLFVYQLHLGVMGSALANTVAQFTLALLLFLYILRSKVYQATWGGWS-LECLQDWASFFRLAIPSMLMLCMEWWAYEIGSFLSGILGMVE--LGAQSVTYELAVIVYMIPMGLSVAVNVRVGNALGAGNIEQAKKSSAVAL 339          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A2_MOUSE (Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 9.767e-24
Identity = 62/181 (34.25%), Postives = 98/181 (54.14%), Query Frame = -2
Query:   22 VYMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQ 564
            VY++  IP L A  +      +L++QG+  P  I  + A V++V +N  L   L+LG+ G A A   + F L+  L +YV   +  +  W G+T    FQ W     LA+PS   VC+EWW +EI  FL GL++  E  + A  ++ +  ++ Y+ PF    + + RVG+ALGAG   +A+
Sbjct:  165 VYVMICIPALPAAFLFQLQTRYLQSQGIIMPQVIVGIAANVVNVGMNAFLLYALDLGVVGSAWANTTSQFFLSALLFLYVWWKRIHIHTWGGWT-RECFQEWSSYTRLAIPSMFMVCIEWWTFEIGTFLAGLVNVTE--LGAQAVIYELASVAYMVPFGFGVAASVRVGNALGAGNADQAR 342          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_XENTR (Multidrug and toxin extrusion protein 1 OS=Xenopus tropicalis GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.276e-23
Identity = 58/186 (31.18%), Postives = 101/186 (54.30%), Query Frame = -2
Query:    7 VYMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAII 564
            +Y++  +P L A  +   +  +L+ QG+  P  +    A + +   NYIL   L LG+ G A A   + F   + L +Y++  +     W G++  + F+ WG  + LAV S + +C+EWW +EI +FL G+L   +  +AA  I+ Q   ++Y+ P  L  + + RVGH LGAG   +A+ +A++
Sbjct:  170 IYVLIFLPALPAAFLYQLLAKYLQNQGIIYPQVLTGFIANIFNALFNYILLYVLGLGVMGSACANTVSQFIQMILLFLYIVWRRLYADTWGGWS-QACFEEWGAFIRLAVASMLMLCIEWWAFEISMFLAGVLGMVD--LAAQAIIYQVAIVVYLIPLGLCIAGSIRVGHGLGAGNTEQAKRSALV 352          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.666e-23
Identity = 60/187 (32.09%), Postives = 101/187 (54.01%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y +  IP L A  +   +  +L+ QG+  P  ++ V    ++   NY L   LNLG++G A A   + F     L +++++ K  L+ W G++     + WGP L LA+PS + +C+EWW YEI  FL GLL   +  ++   I+ +   ++Y+ P  L  ++  RVG ALGA    +A+ +A+ G+
Sbjct:  182 YAMIFIPGLPAIFLYSLLAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSS-QCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLLGVVD--LSGQAIIYEVATVVYMIPMGLGMAVCVRVGTALGAADTLQAKRSAVSGL 365          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_MOUSE (Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.847e-23
Identity = 61/188 (32.45%), Postives = 102/188 (54.26%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRA-FLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y++  IP L A A L+ ++  +L  QG+  P  +  + A +++   NY+   HL+LG+ G ALA   + F L + L +Y++  +     W G++     Q W   L LA+PS + +C+EWW YE+  FL G+L   E  + A  I  +   ++Y+ P   S +   RVG+ALGAG   +A+ ++ I +
Sbjct:  157 YVMIFIPALPA-AFLYTLQVKYLLNQGIVLPQIMTGIAANLVNALANYVFLYHLHLGVMGSALANTISQFALAIFLFLYILWRRLHQATWGGWS-WECLQDWASFLRLAIPSMLMLCIEWWAYEVGSFLSGILGMVE--LGAQSITYELAIIVYMIPSGFSVAANVRVGNALGAGNIDQAKKSSAISL 340          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_DANRE (Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.331e-23
Identity = 59/188 (31.38%), Postives = 98/188 (52.13%), Query Frame = -2
Query:    1 VYMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 564
            +Y+   +P L A  +      +L+ QG+  P  I      +L+  INY+    L LG+ G A A   + ++L + L +Y+         W G++     Q WG  + LA+PS + +C+EWW YEI  FL GL+S  E  + A  ++ +   + Y+FP   + + + RVG+ALGAG   RA+ +A + +
Sbjct:  174 LYVKIFMPALPAAFMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLAVFLYVYIRWKNLHKATWDGWS-RDCLQEWGAFIRLALPSMLMLCVEWWTYEIGGFLAGLISETE--LGAQSVVYELATIAYMFPLGFAVAASVRVGNALGAGNTERAKLSAKVAL 358          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.080e-22
Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYV--------------FPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y++  IP L    + + +  +L+ Q +T P  ++ V    ++   NY L   LNLG++G A A   + F   + L++Y+++ K  L+ W G++     Q WGP   LAVPS + +C+EWW YEI  FL GLLS  +  ++A  ++ +   + Y+               P  LS  +  RVG ALGA    +A+ +A+ G+
Sbjct:  153 YVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSS-QCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVD--LSAQAVIYEVATVTYMRHSHHLAYTAHVARIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGV 350          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_HUMAN (Multidrug and toxin extrusion protein 1 OS=Homo sapiens GN=SLC47A1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.410e-22
Identity = 60/187 (32.09%), Postives = 99/187 (52.94%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRAFLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y+   IP L A  +      +L  QG+  P  +  V A +++   NY+    L+LG+ G ALA   + + L L L +Y++  K     W G++ L   Q W   L LA+PS + +C+EWW YE+  FL G+L   E  + A  I+ +   ++Y+ P   S + + RVG+ALGAG   +A+ ++ + +
Sbjct:  157 YVTIFIPALPATFLYMLQVKYLLNQGIVLPQIVTGVAANLVNALANYLFLHQLHLGVIGSALANLISQYTLALLLFLYILGKKLHQATWGGWS-LECLQDWASFLRLAIPSMLMLCMEWWAYEVGSFLSGILGMVE--LGAQSIVYELAIIVYMVPAGFSVAASVRVGNALGAGDMEQARKSSTVSL 340          
BLAST of CX289300 vs. ExPASy Swiss-Prot
Match: S47A1_RAT (Multidrug and toxin extrusion protein 1 OS=Rattus norvegicus GN=Slc47a1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.406e-22
Identity = 62/188 (32.98%), Postives = 101/188 (53.72%), Query Frame = -2
Query:    1 YMVFSIPELLAQAVLHPIRA-FLRTQGLTAPLTIAAVCAVVLHVPINYILAIHLNLGIKGVALALACNTFNLNLGLIIYVIMSKNSLKPWHGFTILSFFQGWGPLLGLAVPSCISVCLEWWWYEIMLFLCGLLSNPEACVAAMGILIQTTALLYVFPFALSCSLTTRVGHALGAGQPSRAQWTAIIGI 561
            Y++  IP L A A L+ ++  +L  QG+  P  I  + A +++   NY+    L+LG+ G ALA   + F L + L +Y++  K     W G++     Q W   L LA+PS + +C+EWW YE+  FL G+L   E  + A  I  +   ++Y+ P   S +   RVG+ALGAG   +A+ ++ I +
Sbjct:  156 YVMVFIPALPA-AFLYTLQVKYLLNQGIVLPQVITGIAANLVNALANYLFLHQLHLGVMGSALANTISQFALAIFLFLYILWRKLHHATWGGWS-WECLQDWASFLQLAIPSMLMLCIEWWAYEVGSFLSGILGMVE--LGAQSITYELAIIVYMIPAGFSVAANVRVGNALGAGNIDQAKKSSAISL 339          
The following BLAST results are available for this feature:
BLAST of CX289300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
S47A2_HUMAN3.357e-2434.25Multidrug and toxin extrusion protein 2 OS=Homo sa... [more]
S47A1_RABIT3.357e-2433.16Multidrug and toxin extrusion protein 1 OS=Oryctol... [more]
S47A2_MOUSE9.767e-2434.25Multidrug and toxin extrusion protein 2 OS=Mus mus... [more]
S47A1_XENTR1.276e-2331.18Multidrug and toxin extrusion protein 1 OS=Xenopus... [more]
S47A2_RABIT1.666e-2332.09Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
S47A1_MOUSE4.847e-2332.45Multidrug and toxin extrusion protein 1 OS=Mus mus... [more]
S47A1_DANRE6.331e-2331.38Multidrug and toxin extrusion protein 1 OS=Danio r... [more]
S47A2_PONAB1.080e-2231.34Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
S47A1_HUMAN1.410e-2232.09Multidrug and toxin extrusion protein 1 OS=Homo sa... [more]
S47A1_RAT2.406e-2232.98Multidrug and toxin extrusion protein 1 OS=Rattus ... [more]

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Properties
Property NameValue
Genbank descriptionC02011D12SK IF1 Citrus clementina cDNA clone C02011D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289300 ID=CX289300; Name=CX289300; organism=Citrus clementina; type=EST; length=565bp
GATGCCAATTATGGCTGTCCACTGCGCACGCGAAGGTTGGCCAGCACCCA
AGGCATGGCCAACCCGTGTTGTTAAACTGCAGCTTAATGCAAATGGGAAC
ACATACAACAATGCTGTTGTTTGAATAAGGATGCCCATAGCTGCAACACA
AGCCTCTGGATTGCTGAGTAAGCCGCAAAGAAACAGCATTATTTCATACC
ACCACCATTCCAAGCACACAGATATGCAGCTAGGAACTGCTAGTCCCAGC
AATGGCCCCCAGCCTTGAAAGAATGAGAGAATTGTAAACCCATGCCAAGG
TTTGAGTGAATTTTTCGACATGATCACATAGATTATCAATCCCAGGTTCA
AATTAAATGTATTACAGGCCAGAGCCAATGCAACACCTTTGATCCCCAAA
TTTAGATGTATTGCCAGAATGTAGTTAATGGGAACGTGGAGGACGACAGC
ACAAACGGCAGCAATCGTAAGGGGAGCCGTGAGGCCTTGTGTTCGTAAAA
AAGCCCTTATCGGATGGAGGACAGCTTGGGCTAACAATTCTGGAATGGAG
AACACCATGTAAACT
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