CX289305

Overview
NameCX289305
Unique NameCX289305
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289305 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.079e-30
Identity = 75/144 (52.08%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 MMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGQRHGMNAPDRVPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTGCDAQAPAYSGYDTPVRTASSSSSFYDNQLCPICLGNPKD 432
            MM+EFDDNIPARAFDNFQFVNFTEIM+KN   S KETEFAL+ALMEIP QYKAT+EL +LG+R+G   P+R PL                            +         Y    +PV   +SS+S  DNQLCPICL NPKD
Sbjct:  299 MMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGY-IPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPPH-----PTEGYHVRSSPVPPPTSSAS--DNQLCPICLSNPKD 434          
BLAST of CX289305 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.769e-29
Identity = 76/145 (52.41%), Postives = 87/145 (60.00%), Query Frame = 1
Query:    1 MMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGILGQRHGMNAPDRVPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYTGCDAQAPAYSGYDTPVRTASSS-SSFYDNQLCPICLGNPKD 432
            MM+EFDDNIPARAFDNFQFVNFTEIMSKN D SRKETEFAL+ALMEIP QYKAT+EL +LG R+G N P R+PL                             +   ++ P +     P    S   SS  D QLCPICL NPK+
Sbjct:  333 MMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIELNLLGVRNG-NIPQRIPLPPPVQSGS---------------------SFSSSRIPNFEPSVPPYPFESKQMSSADDIQLCPICLSNPKN 455          
BLAST of CX289305 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 MMKEFDDNIPARAFDNFQFVNFTEIMSKNMDLSRKETEFALAALMEIPSQYKATLELGIL 180
            MM  FDDNIP R FDNF FV+F ++M    +    +  FAL ALMEIP QYKA  ELG+L
Sbjct: 7486 MMGRFDDNIPKRLFDNFHFVDFHKVM---FNAPNADASFALNALMEIPDQYKAIKELGLL 7542          
The following BLAST results are available for this feature:
BLAST of CX289305 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH6.079e-3052.08E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH1.769e-2952.41E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL6.320e-1156.67Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionC02011E05SK IF1 Citrus clementina cDNA clone C02011E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289305 ID=CX289305; Name=CX289305; organism=Citrus clementina; type=EST; length=432bp
ATGATGAAGGAATTTGATGATAACATCCCTGCTCGAGCTTTTGATAATTT
TCAGTTTGTGAACTTCACTGAAATCATGTCAAAGAATATGGATCTATCAA
GAAAGGAGACTGAATTTGCTCTTGCAGCTTTGATGGAAATACCTTCTCAA
TATAAGGCAACTCTTGAGCTTGGCATATTGGGCCAGCGGCATGGTATGAA
TGCTCCAGATAGGGTTCCTCTTCCCCCACCGCTTTATAGTGCATCATCTT
CCAGCAGCAGCACAAAACCTTCACGGTCAAGCAGTTTTCAGCCATCTGTA
CCTCCTTATACTGGATGTGATGCACAAGCACCTGCTTATTCTGGATATGA
TACACCGGTCAGAACAGCTTCGTCCTCAAGTTCTTTTTATGATAACCAGC
TGTGCCCCATTTGTCTTGGCAATCCAAAGGAC
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