CX289306

Overview
NameCX289306
Unique NameCX289306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length479
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 2.421e-26
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 CVHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQNLFMA 171
            C+HP FDELRDPNTRLPNGRPLPPLFNFKP ELSGIPPE +NRL+PEHARKQNLFMA
Sbjct:  362 CIHPLFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPEIVNRLVPEHARKQNLFMA 418          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.199e-26
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 1
Query:    1 CVHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQNLFMA 171
            C+HPFFDELRDPN RLPNGRPLPPLFNFKP ELSGIPPET++RL+PEHARKQN FMA
Sbjct:  361 CIHPFFDELRDPNARLPNGRPLPPLFNFKPQELSGIPPETVDRLVPEHARKQNHFMA 417          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.089e-18
Identity = 42/56 (75.00%), Postives = 47/56 (83.93%), Query Frame = 1
Query:    4 VHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQNLFMA 171
            VHPFFDELRDPNTRLPNGR LPPLFNFKP EL G   E +++LIP+HARKQ  F+A
Sbjct:  354 VHPFFDELRDPNTRLPNGRALPPLFNFKPQELKGASLELLSKLIPDHARKQCSFLA 409          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.426e-18
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    4 VHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            VHPFFDELRDPN RLPNGR LPPLFNFKP EL G+P E + +L+PEHARKQ
Sbjct:  353 VHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPVEMVAKLVPEHARKQ 403          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 3.169e-18
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 1
Query:    4 VHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            VHPFFDELRDPN RLPNGR LPPLFNFKP EL G+P E + +L+PEHARKQ
Sbjct:  349 VHPFFDELRDPNARLPNGRFLPPLFNFKPHELKGVPLEMVAKLVPEHARKQ 399          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 5.405e-18
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 1
Query:    7 HPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQNLFM 168
            HPFFDELRDPN RLP GR LPPLFNFKP EL G+P ET+ +L+PEHARKQ  F+
Sbjct:  356 HPFFDELRDPNARLPTGRFLPPLFNFKPHELKGVPVETLMKLVPEHARKQCPFL 409          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG6_ARATH (Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 7.060e-18
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 1
Query:    1 CVHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            C HPFF+ELR+PN RLPNGRPLPPLFNFK  ELSG  PE INRLIPEH R+Q
Sbjct:  351 CAHPFFNELREPNARLPNGRPLPPLFNFK-QELSGASPELINRLIPEHVRRQ 401          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.573e-17
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    4 VHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            VHPFFDELRDPNTRLPNGR LPPLFNFK  EL G+P E + +L+P HARKQ
Sbjct:  354 VHPFFDELRDPNTRLPNGRHLPPLFNFKANELKGVPAEMLVKLVPSHARKQ 404          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.271e-16
Identity = 39/52 (75.00%), Postives = 42/52 (80.77%), Query Frame = 1
Query:    1 CVHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            C HPFF+ELR+PN RLPNGRPLPPLFNFK  EL G   E INRLIPEH R+Q
Sbjct:  349 CAHPFFNELREPNARLPNGRPLPPLFNFK-QELGGASMELINRLIPEHVRRQ 399          
BLAST of CX289306 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 5.059e-16
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    4 VHPFFDELRDPNTRLPNGRPLPPLFNFKPPELSGIPPETINRLIPEHARKQ 156
            VHPF+D++RDPNTRLPNGR LPPLFNFK  EL G+P E + +L+P HARKQ
Sbjct:  354 VHPFYDDVRDPNTRLPNGRFLPPLFNFKVNELKGVPAEMLVKLVPPHARKQ 404          
The following BLAST results are available for this feature:
BLAST of CX289306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
KSG10_ARATH2.421e-2689.47Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
KSG4_ARATH9.199e-2687.72Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG5_ARATH1.089e-1875.00Shaggy-related protein kinase epsilon OS=Arabidops... [more]
KSG3_ARATH2.426e-1878.43Shaggy-related protein kinase gamma OS=Arabidopsis... [more]
KSG1_ARATH3.169e-1878.43Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
MSK1_MEDSA5.405e-1874.07Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG6_ARATH7.060e-1878.85Shaggy-related protein kinase zeta OS=Arabidopsis ... [more]
MSK2_MEDSA1.573e-1776.47Glycogen synthase kinase-3 homolog MsK-2 OS=Medica... [more]
KSG9_ARATH2.271e-1675.00Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
MSK3_MEDSA5.059e-1670.59Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]

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Properties
Property NameValue
Genbank descriptionC02011E06SK IF1 Citrus clementina cDNA clone C02011E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289306 ID=CX289306; Name=CX289306; organism=Citrus clementina; type=EST; length=479bp
TGTGTTCACCCTTTCTTTGATGAATTAAGGGACCCAAACACCCGCCTTCC
TAATGGTCGCCCCCTTCCACCCCTGTTTAATTTTAAACCTCCAGAGCTTT
CGGGCATCCCACCTGAAACCATCAACAGACTCATCCCAGAGCACGCTCGT
AAGCAGAACTTATTCATGGCTTTGCACTCTTAGCATCTGTTACAAGTCTC
CTCCGTAAGTTTATCTTGAACGTTTTATCGACACTTGTAAAAATCCGTCA
CCGTTTTTTCATTTATCATTGTCTCTTTAGTTCCGGTGAGGAAAGAGTGT
TGCAGAAGGAATGTTTAGGAGAATTTGGGAGACCTGACTGAGGCTTTGAG
TTTGTTTATTTGTCATTACGAGTTACGGCTTTGGATGAAGACAATTTTTT
TTTTTTTTTTTAACTTATCATGTAATTTGTTGTATCCCTGTTTCATGGGC
GAGTTTAGTGAGATGAAAAATATGAGAAT
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