CX289315

Overview
NameCX289315
Unique NameCX289315
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig294 contig Ccv1_Contig294:547..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX289315 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.871e-11
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 3 
Query:   15 VFGQYGELVHVKIPAGKRCGFVQSANRTCAEQALSALNGTQLGGQSIKLSWGRS-------PLNKQSYQAQ 206
            +F  +GE+V+VKIP GK CGFVQ  NR  AE A++ L G  LG   I+LSWGR+        LN QS  +Q
Sbjct:  322 LFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRNQNPIAAPALNYQSQVSQ 392
The following BLAST results are available for this feature:
BLAST of CX289315 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YG41_SCHPO9.871e-1149.30Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC02011F03SK IF1 Citrus clementina cDNA clone C02011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289315 ID=CX289315; Name=CX289315; organism=Citrus clementina; type=EST; length=408bp
AATTCCGCACGAGGGTCTTTGGTCAATATGGTGAGTTAGTTCATGTGAAA
ATACCAGCGGGCAAGCGCTGCGGGTTTGTTCAGTCTGCTAACAGAACTTG
TGCGGAGCAAGCACTATCAGCTTTGAATGGCACCCAATTAGGAGGACAAA
GCATTAAACTGTCATGGGGGCGTAGTCCTTTAAACAAACAGTCATATCAG
GCCCAATGGAACGGAGGTGGATACTATGGTTTTGCACAAGGATACAAGGC
ATATGGATATGCGCCTGCTACCCAAGACCCGAACATGTACTATGGGGGCT
TTCCTGGATATGGGACTTACCAACAGCCAGGGTCTTACCAACAGCCACAG
CAGTGATGTATTTATGGTGCAAGTCTTGAAGCTGGCGTAGCCATAATCAA
ATTGAATT
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