CX289357

Overview
NameCX289357
Unique NameCX289357
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length382
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289357 vs. ExPASy Swiss-Prot
Match: PUB34_ARATH (U-box domain-containing protein 34 OS=Arabidopsis thaliana GN=PUB34 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.972e-15
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  159 IAADGFTYEHRAIKAWLEKHNVSPVTKLRLQHLSIIPNYTLRSAIQQWRSPV 314
            IAADGFTYE +AI AWLEKHN+SPVT+ +L H  + PN+TLRSAI+ W+S V
Sbjct:  743 IAADGFTYERKAILAWLEKHNISPVTRQKLDHFKLTPNHTLRSAIRDWKSRV 794          
BLAST of CX289357 vs. ExPASy Swiss-Prot
Match: PUB53_ARATH (Putative U-box domain-containing protein 53 OS=Arabidopsis thaliana GN=PUB53 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.993e-11
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = -3
Query:  165 CRCLCKVGKQQCLCTKPLLIAADGFTYEHRAIKAWLEKHNVSPVTKLRLQHLSIIPNYTLRSAIQQWRS 371
            C  L  V K+ C       IAADG+TY+ RAI+ W+E H  SPVT   LQ+++++PN+TL +AI +WR+
Sbjct:  755 CPLLKDVMKEPC-------IAADGYTYDRRAIEEWMENHRTSPVTNSPLQNVNLLPNHTLYAAIVEWRN 816          
BLAST of CX289357 vs. ExPASy Swiss-Prot
Match: PUB33_ARATH (U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.800e-11
Identity = 29/49 (59.18%), Postives = 40/49 (81.63%), Query Frame = -3
Query:  171 IAADGFTYEHRAIKAWLE-KHNVSPVTKLRLQHLSIIPNYTLRSAIQQW 314
            +AADGFTYE  AI+AWL+ +H+ SP+T ++L H S+I N+ LRSAIQ+W
Sbjct:  781 VAADGFTYEAEAIRAWLDSEHDTSPMTNVKLSHTSLIANHALRSAIQEW 829          
The following BLAST results are available for this feature:
BLAST of CX289357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB34_ARATH2.972e-1567.31U-box domain-containing protein 34 OS=Arabidopsis ... [more]
PUB53_ARATH1.993e-1146.38Putative U-box domain-containing protein 53 OS=Ara... [more]
PUB33_ARATH5.800e-1159.18U-box domain-containing protein 33 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC02012B02SK IF1 Citrus clementina cDNA clone C02012B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289357 ID=CX289357; Name=CX289357; organism=Citrus clementina; type=EST; length=382bp
ATCAATGGCTGAGTGTGGGATCAACCAGAGGACGTCTATCACAAATGGAG
GATGGTTTCAGCAAACTTGCTAAGCGAACCCGGAAACTGCTGATTACGCA
TTGAAAGGATACAAGGAATGAAAAGGGGACACAATTCAACTATCATTTAC
AGAGATGTCACAGGTGACCTCCATTGCTGAATGGCAGAACGCAGTGTGTA
GTTTGGAATAATTGACAAATGCTGGAGCCTAAGCTTTGTCACTGGAGATA
CATTGTGTTTCTCAAGCCATGCCTTGATTGCTCTATGCTCATAAGTAAAT
CCATCAGCAGCAATAAGAAGTGGCTTGGTGCATAAACATTGCTGCTTTCC
AACTTTACACAAGCATCTGCAACATCCTTGAG
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