CX289380

Overview
NameCX289380
Unique NameCX289380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig895 contig Ccv1_Contig895:249..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: JP650_ARATH (Probable polygalacturonase non-catalytic subunit JP650 OS=Arabidopsis thaliana GN=JP650 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 1.358e-28
Identity = 61/111 (54.95%), Postives = 73/111 (65.77%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            KVNF NY + FN  S  F+GYG+ A+G K+ FK Y P+ +FKDYAK GV FA                     W+EPGKFFRES LK GTV+PMPDI+DKMP+RSFLPR+I
Sbjct:  333 KVNFVNYGQSFNPGSETFTGYGKGAEGSKLSFKTYTPNSTFKDYAKKGVAFAKYNVSTTTANTVGDGKTVNK-WIEPGKFFRESSLKEGTVIPMPDIKDKMPKRSFLPRSI 442          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: JP630_ARATH (Probable polygalacturonase non-catalytic subunit JP630 OS=Arabidopsis thaliana GN=JP630 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.698e-26
Identity = 60/111 (54.05%), Postives = 71/111 (63.96%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            KV+F NY +  N  S  FSGYG+ A+G KI FK Y  + +FKDY KTGV FA                     WVEPGKFFRESMLK GT++ MPDI+DKMP+RSFLPR+I
Sbjct:  334 KVDFVNYGKSINPGSESFSGYGKGAEGNKIDFKTYTQNSTFKDYTKTGVEFAKYNRSSLGGGKTVNK------WVEPGKFFRESMLKEGTLIWMPDIKDKMPKRSFLPRSI 438          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: Y639_ARATH (Probable polygalacturonase non-catalytic subunit At1g60390 OS=Arabidopsis thaliana GN=At1g60390 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.718e-23
Identity = 56/111 (50.45%), Postives = 67/111 (60.36%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXXWVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            KVNF NY + FN  S  F+GYG++  G  + FK YG  +SFK Y K GV FA                     WVE GKFFRE+MLK GT+M MPDI+DKMP+R+FLPR I
Sbjct:  336 KVNFVNYGKSFNLGSDNFTGYGQDNVGGNVSFKTYGQGQSFKVYTKDGVVFARYSNNVSSNGKTVNK------WVEEGKFFREAMLKEGTLMQMPDIKDKMPKRTFLPRNI 440          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: GP3_SOLLC (Polygalacturonase non-catalytic subunit AroGP3 OS=Solanum lycopersicum GN=GP3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.244e-23
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            + NF NY + FN  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI
Sbjct:  334 EANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAI 448          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: GP2_SOLLC (Polygalacturonase non-catalytic subunit AroGP2 OS=Solanum lycopersicum GN=GP2 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.998e-23
Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            + NF NY + FN  +  F  YG+  +   I FK YG + +FKDY K   TF+                         W+EPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPRAI
Sbjct:  331 EANFTNYGQSFNEGTDVFITYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQDLASLSEVNGGKKVNNRWIEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRAI 445          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: GP1_SOLLC (Polygalacturonase-1 non-catalytic subunit beta OS=Solanum lycopersicum GN=GP1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.998e-23
Identity = 53/115 (46.09%), Postives = 66/115 (57.39%), Query Frame = 2
Query:    2 KVNFANYQEDFNSVSHKFSGYGENADGQKIGFKVYGPDRSFKDYAKTGVTFAXXXXXXXXXXXXXXXXXXXXX----WVEPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            + NF NY + FN  +  F+ YG+  +   I FK YG + +FKDY K   TF+                         WVEPGKFFRE MLK+GT+MPMPDI+DKMP+RSFLPR I
Sbjct:  332 EANFTNYGQSFNEGTDVFTTYGKGGNDPHINFKTYGVNNTFKDYVKDTATFSNYHNKTSQVLASLMEVNGGKKVNNRWVEPGKFFREKMLKSGTIMPMPDIKDKMPKRSFLPRVI 446          
BLAST of CX289380 vs. ExPASy Swiss-Prot
Match: BURPC_ORYSJ (BURP domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=BURP12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.469e-16
Identity = 52/117 (44.44%), Postives = 62/117 (52.99%), Query Frame = 2
Query:   11 FANYQEDFNSVSHKFSGYGENAD-GQKIGFKVY-GPDRSFKDYAKTGVTF------AXXXXXXXXXXXXXXXXXXXXXWV-EPGKFFRESMLKTGTVMPMPDIRDKMPQRSFLPRAI 334
            F NY   FN  +  F GYGE ++    IGFK Y G + SFK YAK+GV F      +                     W  EPGKFFRE+ L +G  MPMPDI+DKMP R+FLPR I
Sbjct:  330 FQNYGGSFNPGTVTFKGYGEGSNPNHHIGFKEYAGSNNSFKGYAKSGVDFKEYHNTSSADAATTMSLEAVSSGHQHLKWSPEPGKFFRETELVSGNTMPMPDIKDKMPPRAFLPRDI 446          
The following BLAST results are available for this feature:
BLAST of CX289380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
JP650_ARATH1.358e-2854.95Probable polygalacturonase non-catalytic subunit J... [more]
JP630_ARATH3.698e-2654.05Probable polygalacturonase non-catalytic subunit J... [more]
Y639_ARATH1.718e-2350.45Probable polygalacturonase non-catalytic subunit A... [more]
GP3_SOLLC2.244e-2346.09Polygalacturonase non-catalytic subunit AroGP3 OS=... [more]
GP2_SOLLC4.998e-2346.09Polygalacturonase non-catalytic subunit AroGP2 OS=... [more]
GP1_SOLLC4.998e-2346.09Polygalacturonase-1 non-catalytic subunit beta OS=... [more]
BURPC_ORYSJ3.469e-1644.44BURP domain-containing protein 12 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionC02012D07SK IF1 Citrus clementina cDNA clone C02012D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289380 ID=CX289380; Name=CX289380; organism=Citrus clementina; type=EST; length=335bp
GAAAGTCAATTTCGCTAATTACCAGGAGGATTTCAACAGTGTCTCGCATA
AATTCTCTGGATACGGGGAGAATGCGGACGGACAAAAGATCGGGTTCAAA
GTTTATGGACCAGATCGCAGTTTTAAAGACTATGCCAAAACCGGTGTAAC
TTTTGCCAGCTACAGTAAAAGCGGCTCTGGCTCAGCCAGTGGCAGTTCGG
TGAATAAAAATAATAATAAATGGGTGGAGCCGGGCAAGTTCTTCCGCGAG
TCTATGCTGAAGACGGGAACTGTGATGCCAATGCCTGACATTCGAGATAA
AATGCCTCAAAGGTCGTTTCTGCCCCGGGCCATCG
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