CX289420

Overview
NameCX289420
Unique NameCX289420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length507
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289420 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 7.785e-45
Identity = 90/168 (53.57%), Postives = 120/168 (71.43%), Query Frame = 3
Query:    6 ELLADPHLLPASHVNYTDGADLFRYVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSIAPEILKPDITAPGVTIIAAYTEAVGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYK-ATPFSYGAGH 506
            EL+AD HLLPA+ V    G  +  YV +   P   ++   T +G+KP+P++AAFSS+GP+SI P ILKPD+ APGV I+AA+T A GPT    D RR+ FN +SGTSMSCPHVSG+  LLK++HPEWSPAAI+SA+MTTA     +   +L+ ++ K +TPF +GAGH
Sbjct:  436 ELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGKPSTPFDHGAGH 603          
BLAST of CX289420 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.276e-28
Identity = 71/164 (43.29%), Postives = 101/164 (61.59%), Query Frame = 3
Query:   15 ADPHLLPASHVNYTDGADLFRYVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSIAPEILKPDITAPGVTIIAAYTEAVGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAGH 506
            AD + LP+S ++  D     RY+ S + P   + ++TT L    AP++ +FSS+GP+    +++KPDI+ PGV I+AA+  +V P      RR   FN +SGTSMSCPH++GI   +KT +P WSPAAIKSA+MTTAS         +NA       F+YG+GH
Sbjct:  426 ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWP-SVAPVGGI--RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS--------PMNARFNPQAEFAYGSGH 577          
BLAST of CX289420 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.621e-28
Identity = 67/159 (42.14%), Postives = 101/159 (63.52%), Query Frame = 3
Query:   27 LLPASHVNYTDGADLFRYVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSIAPEILKPDITAPGVTIIAAYTEAVGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQILNASSYKATPFSYGAG 503
            + PA+ VN + G  ++RY+NST R    + + T ++ + PAP +A+FSS+GP+  +  +LKPDI APG+ I+AA+T     T  D D +   F  LSGTSM+CPHV+G+   +K+ HP+W+PAAIKSAI+T+A        + ++    K   F+YG G
Sbjct:  439 MAPATSVNSSVGDIIYRYINST-RSASAVIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSA--------KPISRRVNKDAEFAYGGG 587          
BLAST of CX289420 vs. ExPASy Swiss-Prot
Match: SUBV_BACSU (Minor extracellular protease vpr OS=Bacillus subtilis GN=vpr PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.605e-11
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 3
Query:   30 LPASHVNYTDGADLFRYVNSTKRPVGYLTRATTELGLKPAPIMAAFSSKGPSSIAPEILKPDITAPGVTIIAAYTEAVGPTNEDYDRRRIPFNALSGTSMSCPHVSGIVGLLKTLHPEWSPAAIKSAIMTTASIQDNNKGQI 455
            +P   ++  DG  L   + + +    +    +  LG +    +A FSS+GP  +   ++KPDI+APGV I++       PT++        + +  GTSM+ PH++G V ++K   P+WS   IK+AIM TA    ++ G++
Sbjct:  448 VPTIKLSLEDGEKLVSALKAGETKTTFKLTVSKALGEQ----VADFSSRGPV-MDTWMIKPDISAPGVNIVSTI-----PTHDP--DHPYGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577          
The following BLAST results are available for this feature:
BLAST of CX289420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SUBL_ARATH7.785e-4553.57Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME2.276e-2843.29Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH6.621e-2842.14Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
SUBV_BACSU9.605e-1130.28Minor extracellular protease vpr OS=Bacillus subti... [more]
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Properties
Property NameValue
Genbank descriptionC02013A01SK IF1 Citrus clementina cDNA clone C02013A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289420 ID=CX289420; Name=CX289420; organism=Citrus clementina; type=EST; length=507bp
GGAATGAGCTATTAGCCGATCCTCATCTCCTTCCTGCTTCACATGTCAAC
TACACCGATGGCGCTGATTTATTTAGATATGTCAATTCAACCAAGCGTCC
TGTTGGTTACCTTACCCGTGCAACCACAGAACTCGGATTAAAGCCAGCTC
CAATCATGGCAGCCTTTTCATCAAAAGGACCAAGCTCTATTGCCCCAGAG
ATCCTTAAGCCTGATATCACTGCACCAGGAGTGACAATTATAGCTGCCTA
TACTGAAGCAGTAGGGCCAACAAATGAAGATTACGACAGGCGTCGGATTC
CATTTAACGCTCTCTCAGGAACTTCAATGTCATGTCCTCATGTTTCTGGC
ATTGTTGGTCTACTCAAAACTCTCCACCCTGAATGGAGTCCTGCAGCAAT
TAAATCAGCCATCATGACCACAGCATCAATACAAGATAATAATAAGGGAC
AAATTCTAAATGCTTCGTCTTACAAAGCAACACCTTTTAGCTATGGAGCA
GGGCATA
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